Publications Citing Use of NIGHTSEA Equipment

The 541 publications listed on this page cite the use of NIGHTSEA equipment in their Methods section. If you know of any references that should be added to this list, please email nightsea@nightsea.com.

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The more than 270 journals in which the papers below have been published include:

3 Biotech … Acarologia … ACS Applied Materials & Interfaces … ACS Biomaterials Science & Engineering … ACS Chemical Neuroscience … Acta Biomaterialia … Acta Neuropathologica … Addiction Neuroscience … Advanced Functional Materials … African Journal of Microbiology Research … American Entomologist … American Journal of Botany … American Journal of Pathology … American Journal of Physiology – Renal Physiology … Angle Orthodontist … Animal Behaviour … Annals of Neurology … Antibiotics … Anticancer Research … Appetite … Applied Biochemistry and Biotechnology … Applied and Environmental Microbiology … Applied Microbiology and Biotechnology … Applied Optics … Aquaculture, Fish and Fisheries … Aquaculture Research … Aquatic Biology … Aquatic Living Resources … Archives of Insect Biochemistry and Physiology … Archives of Microbiology … Autism Research … Autonomic Neuroscience: Basic & Clinical … Behavioural Processes … Biochemistry and Molecular Biology Education … Biological Psychiatry … Biology Open … Biomolecules … Bio-Protocol … bioRχiv … Biosensors and Bioelectronics … Blood … BMC Biology … BMC Plant Biology … BMC Research Notes … Bone … Brain Research … Cancer Discovery … Cancer Management and Research … Cancer Research … Cell … Cell Death & Differentiation … Cell Reports … Cell Reports Medicine … Cell Stem Cell … Cells … Cellular and Molecular Life Sciences … Cerebral Cortex … Chinese Medical Journal … Circulation Research … Communications Biology … Computer Vision and Image Understanding … Conservation Biology … Conservation Physiology … Copeia … Coral Reefs … Current Biology … Current Protocols Essential Laboratory Techniques … Cytoskeleton … Development … Developmental Biology … Developmental Cell … Developmental Dynamics … Developmental Neuroscience … Differentiation … DNA Repair … Ecological Engineering … Ecological Indicators … Ecology … Ecology and Evolution … Ecosphere … eLife … EMBO Molecular Medicine … eNeuro … Engineering in Life Sciences … Entomologia Experimentalis et Applicata … Environment International … Environmental Conservation … Environmental Entomology … Environmental Pollution … Environmental Science and Pollution Research … Environmental Science & Technology … Environmental Science: Nano … Estuaries and Coasts … Estuarine, Coastal and Shelf Science … European Journal of Neuroscience … Evolutionary Applications … Experimental and Therapeutic Medicine … Experimental Neurology … F1000Research … FEBS Journal … Fish & Shellfish Immunology … Florida Entomologist … Food Science & Nutrition … Forensic Science International … Free Radical Biology and Medicine … Frontiers in Behavioral Neuroscience … Frontiers in Bioengineering and Biotechnology … Frontiers in Cell and Developmental Biology … Frontiers in Cellular Neuroscience … Frontiers in Ecology and Evolution… Frontiers in Genome Editing … Frontiers in Marine Science … Frontiers in Microbiology … Frontiers in Molecular Neuroscience … Frontiers in Neuroanatomy … Frontiers in Neuroscience … Frontiers in Oncology … Frontiers in Plant Science … Frontiers in Synaptic Neuroscience … Function … Fungal Biology and Biotechnology … G3 … Galaxea, Journal of Coral Reef Studies … Genes, Brain, and Behavior … Genesis … Genetics … Glia … The Great Lakes Entomologist … Hereditas … Herpetological Conservation and Biology … Herpetology Notes … Horticulturae … Human Molecular Genetics … Hydrobiologia … Ichthyology & Herpetology … ICES Journal of Marine Science … In Vitro Cellular & Developmental Biology – Plant … Indian Journal of Dental Research … Indian Journal of Geo Marine Sciences … Industrial Crops and Products … Insects… International Journal of Molecular Sciences … International Journal of Rock Mechanics and Mining Sciences … International Society for Optics and Photonics … Invertebrate Biology … The ISME Journal … Journal of Advanced Sciences … Journal of the American Mosquito Control Association … Journal of Applied Microbiology … Journal of Archaeological Science: Reports … Journal of Bacteriology … Journal of Biological Chemistry … Journal of Biotechnology … Journal of Cell Biology … Journal of Cell Science … Journal of Cellular and Molecular Medicine … Journal of Clinical Investigation … Journal of Economic Entomology… Journal of Environmental Management … Journal of Experimental Biology … Journal of Experimental Marine Biology and Ecology … Journal of Experimental Zoology Part B: Molecular and Developmental Evolution … Journal of Field Robotics … Journal of Fish Biology … Journal of Forensic Sciences … Journal of Fungi … Journal of Innovative Optical Health Sciences … Journal of Insect Science … Journal of Integrative Plant Biology … Journal of Limnology … Journal of Marine Science and Engineering … Journal of Marine Sciences … Journal of Materials Chemistry B … Journal of Microbiological Methods … Journal of Microbiology & Biology Education … Journal of Molluscan Studies … Journal of Neurochemistry … Journal of Neuroinflammation … Journal of Neurophysiology … Journal of Neuroscience … Journal of Neuroscience Methods … Journal of Neuroscience Research … Journal of Neurotrauma … Journal of Pest Science … Journal of Physiology … Journal of Plankton Research … Journal of Proteomics … Journal of Stored Products Research … Journal of Visualized Experiments … Langmuir … Learning & Memory … Letters in Applied Microbiology … Limnology and Oceanography … Limnology and Oceanography Methods … Madsen – Journal of Cell Biology … Marine Biodiversity … Marine Biology … Marine Biology Research … Marine Ecology Progress Series … Marine Pollution Bulletin … Materials & Design … Materials Science and Engineering: C … Methods in Cell Biology … Methods in Ecology and Evolution … Methods in Enzymology … Methods in Molecular Biology … Microbiome … Microorganisms … Microscopy and Microanalysis … Molecular Biology Evolution … Molecular Breeding … Molecular Ecology … Molecular Neurobiology … Molecular Plant … Molecular Psychiatry … Molecular Therapy: Methods & Clinical Development … Molecular Therapy-Nucleic Acids … Molecules … mSphere … mSystems … Nanotheranostics … Nature Biomedical Engineering … Nature Biotechnology … Nature Cancer … Nature Chemical Biology … Nature Communications … Nature Metabolism … Nature Methods … Nature Protocols … Neural Development … Neurobiology of Disease … Neuron … Neuropharmacology … Neuropsychopharmacology … Neuroscience Insights … Notch Signaling Research … Oncology Reports … PeerJ … Pharmaceutics … Photochemistry and Photobiology … Physiological Reports … PhytoFrontiers … Phytopathology … Pigment Cell & Melanoma Research … Plant Biotechnology Journal … The Plant Cell … Plant Cell Reports … Plant Cell, Tissue and Organ Culture … Plant Disease … The Plant Journal … Plant Methods … Plant Molecular Biology … Plant Physiology … Plant Science … Plants … PLoS Computational Biology … PLoS Genetics … PLOS Neglected Tropical Diseases … PLoS One … PLoS Pathogens … PLoS Water … Polymer … PNAS … PNAS nexus … Proceedings of the Royal Society B … Protein Science … Psyche: A Journal of Entomology … Psychoneuroendocrinology … Publication of the Association for Biology Laboratory Education … Reproductive BioMedicine Online … Research Square … Restoration Ecology … Revista de biología marina y oceanografía … Rice … Science … Science Advances … Science China Life Sciences … Scientia Marina … Scientific Reports … STAR Protocols … Stem Cell Research & Therapy … Terra et Aqua … Theoretical and Applied Genetics … Tissue Engineering and Regenerative Medicine … Toxicological Sciences … Toxics … Translational Oncology … Transportation Research Record … Vector-Borne and Zoonotic Diseases … Vertebrate Zoology … Virology … Waste Management … The Wilson Journal of Ornithology

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Abdul Wahab, M. A., Ferguson, S., Snekkevik, V. K., McCutchan, G., Jeong, S., Severati, A., … & Diaz-Pulido, G. (2023). Hierarchical settlement behaviours of coral larvae to common coralline algae. Scientific Reports, 13(1), 5795.

Accinelli, C., Abbas, H. K., Bruno, V., Khambhati, V. H., Little, N. S., Bellaloui, N., & Shier, W. T. (2022). Field studies on the deterioration of microplastic films from ultra-thin compostable bags in soil. Journal of Environmental Management, 305. doi: 10.1016/j.jenvman.2021.114407.

Accinelli, C., Abbas, H. K., Bruno, V., Nissen, L., Vicari, A., Bellaloui, N., … & Shier, W. T. (2020). Persistence in soil of microplastic films from ultra-thin compostable plastic bags and implications on soil Aspergillus flavus population. Waste Management, 113, 312-318.

Adhikari, S., Mudalige, A., Phillips, L., Lee, H., Bernal, V., Gruszewski, H., … & Park, S. Y. (2024). Agrobacterium-mediated Cuscuta campestris transformation as a tool for understanding plant-plant interactions. bioRxiv, 2024-02.

Afentoulis, V., Kalmbach, A., Hung, T. C., Rahman, M. M., Ellison, L., & Miranda, J. (2022). Vital dye immersion evaluations with juvenile delta smelt. Aquaculture, Fish and Fisheries, 3(1), 102-111.

Aitken, J., V. Ramnath, V. Feygels, A. Mathur, M. Kim, J. Y. Park, and G. Tuell, 2010. Prelude to CZMIL: seafloor imaging and classification results achieved with CHARTS and the rapid environmental assessment (REA) processor. Proc. SPIE 7695, Algorithms and Technologies for Multispectral, Hyperspectral, and Ultraspectral Imagery XVI.

Akter, H., Taylor, P. W., & Crisp, P. (2020). Visibility and Persistence of Fluorescent Dyes, and Impacts on Emergence, Quality, and Survival of Sterile Queensland Fruit Fly Bactrocera tryoni (Diptera: Tephritidae). Journal of Economic Entomology, 113(6), 2800-2807. doi: 10.1093/jee/toaa225

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) on an Olympus SZX7 microscope to inspect flies for the presence of dye particles.

Al‐muhtasib, N., Forcelli, P. A., & Vicini, S. (2018). Differential electrophysiological properties of D1 and D2 spiny projection neurons in the mouse nucleus accumbens core. Physiological Reports, 6(13), e13784.

Alison, L., Rühs, P. A., Tervoort, E., Teleki, A., Zanini, M., Isa, L., & Studart, A. R. (2016). Pickering and network stabilization of biocompatible emulsions using chitosan-modified silica nanoparticles. Langmuir. doi:10.1021/acs.langmuir.6b03439

Aljiboury, A. A., Ingram, E., Krishnan, N., Ononiwu, F., Pal, D., Manikas, J., … & Hehnly, H. (2023). Rab8, Rab11, and Rab35 coordinate lumen and cilia formation during zebrafish left-right organizer development. PLoS genetics, 19(5), e1010765.

Am Seo, B., Kang, M. G., Choi, S. Y., & Lee, S. H. (2024). LARGE protein drives homeostatic scaling-down after long-term potentiation. Research Square

An, X., Dong, Z., Tian, Y., Xie, K., Wu, S., Zhu, T., … & Hou, Q. (2019). ZmMs30 Encoding a Novel GDSL Lipase is Essential for Male Fertility and Valuable for Hybrid Breeding in Maize. Molecular Plant.

An, X., Ma, B., Duan, M., Dong, Z., Liu, R., Yuan, D., … & Yu, D. (2020). Molecular regulation of ZmMs7 required for maize male fertility and development of a dominant male-sterility system in multiple species. Proceedings of the National Academy of Sciences. doi: 10.1073/pnas.2010255117

Anastasio, N. C., Stutz, S. J., Fox, R. G., Sears, R. M., Emeson, R. B., DiLeone, R. J., … & Cunningham, K. A. (2014). Functional status of the serotonin 5-HT2C receptor (5-HT2CR) drives interlocked phenotypes that precipitate relapse-like behaviors in cocaine dependence. Neuropsychopharmacology, 39(2), 370-382. doi:10.1038/npp.2013.199

Anastasio, N. C., Stutz, S. J., Fink, L. H., Swinford-Jackson, S. E., Sears, R. M., DiLeone, R. J., … & Cunningham, K. A. (2015). Serotonin (5-HT) 5-HT2A Receptor (5-HT2AR): 5-HT2CR Imbalance in Medial Prefrontal Cortex Associates with Motor Impulsivity. ACS Chemical Neuroscience. doi:10.1021/acschemneuro.5b00094

Andersen, C., Dunlap, C., Freeman, M., & Hicks, B. W. (2020) Imaging and analysis of near-infrared fluorescence from tiger chert and Native American tiger chert artifacts. Journal of Archaeological Science: Reports, 35, 102722. doi: 10. 1016/ j. jasrep. 2020. 102722

• Used the Sola NIGHTSEA light to excite near infrared (NIR) fluorescence in samples.

Andis, A. Z. (2018). A New, Noninvasive Method of Batch-Marking Amphibians Across Developmental Stages. Herpetological Conservation and Biology, 13(2), 423-432.

Anthes, N., Theobald, J., Gerlach, T., Meadows, M. G., & Michiels, N. K. (2016). Diversity and Ecological Correlates of Red Fluorescence in Marine Fishes. Frontiers in Ecology and Evolution, 4, 126.

Aparicio, G. I., & Monje, P. V. (2023). Human Schwann cells in vitro I. Nerve Tissue Processing, Pre-degeneration, Isolation, and Culturing of Primary Cells. Bio-Protocol, 13(22).

Aquino-Michaels, T. G., Costantini, M. S., Láruson, Á. J., Reed, F. A., & Sutton, J. T. (2018). Robust, safe, and reversible ribosomal protein gene drive. arXiv preprint arXiv:1806.05304.

Azadi, R., Bohn, S., Lopez, E., Lafer-Sousa, R., Wang, K., Eldridge, M. A., & Afraz, A. (2023). Image-dependence of the detectability of optogenetic stimulation in macaque inferotemporal cortex. Current biology.

Bähr, S., & Van Der Meij, S. E. (2019). Red fluorescence in symbiotic coral-dwelling gall crabs. Galaxea, Journal of Coral Reef Studies, 21(1), 27-28.

• Used the GoBe NIGHTSEA light to find and photograph specimens.

Baillie, L. D., V. Hagen, K,. M. Gardner, and S. J. Mulligan, 2011. Functional imaging within individual pain fibres ex vivo with optical microscopy. Journal of Neuroscience Methods, 198(2): 274–279.

Baird, A. H., A. Salih, and A. Trevor-Jones, 2006. Fluorescence census techniques for the early detection of coral recruits. Coral Reefs, 25:73-76.

Baltazar, A., Tucker, A., Jang, J., Vo, K., & Dulin, J. (2023). Differences in anatomical outcomes between early chronic and far chronic time points after transplantation of spinal cord neural progenitor cells in mice. Journal of Neurotrauma, (accepted).

Banerji, R., Grifno, G. N., Shi, L., Smolen, D., LeBourdais, R., Muhvich, J., … & Nia, H. T. (2023). Crystal ribcage: a platform for probing real-time lung function at cellular resolution. Nature Methods, 20(11), 1790-1801.

Baril, C., Gavory, G., Bidla, G., Knævelsrud, H., Sauvageau, G., & Therrien, M. (2016). Human NUP98-HOXA9 promotes hyperplastic growth of hematopoietic tissues in Drosophila. Developmental Biology, 421(1), 16-26.

Barr, J., Gilmutdinov, R., Wang, L., Shidlovskii, Y., & Schedl, P. (2019). The Drosophila CPEB Protein Orb Specifies Oocyte Fate by a 3’UTR Dependent Autoregulatory Loop. Genetics. doi:10.1534/genetics.119.302687.

• Used the Stereo Microscope Fluorescence Adapter SFA-GR (Green) to screen for DsRed expression.

Barrasso, A. P., Tong, X., & Poché, R. A. (2017). The mito:: mKate2 mouse: A far‐red fluorescent reporter mouse line for tracking mitochondrial dynamics in vivo. genesis. doi: 10.1002/dvg.23087

Barrasso, A. P., Wang, S., Tong, X., Christiansen, A. E., Larina, I. V., & Poché, R. A. (2018). Live imaging of developing mouse retinal slices. Neural Development, 13(1), 23.

Becker‐Krail, D. D., Parekh, P. K., Ketchesin, K. D., Yamaguchi, S., Yoshino, J., Hildebrand, M. A., … & McClung, C. A. (2022). Circadian Transcription Factor NPAS2 and the NAD+‐Dependent Deacetylase SIRT1 Interact in the Mouse Nucleus Accumbens and Regulate Reward. European Journal of Neuroscience, , 55(3), 675-693. doi: 10.1111/ejn.15596

Beijbom O, Treibitz T, Kline DI, Eyal G, Khen A, Neal B, Loya Y, Mitchell BG, Kriegman D (2016) Improving automated annotation of benthic survey images using wide-band fluorescence. Scientific Reports 6: 23166. http://dx.doi.org/10.1038/srep23166

Ben-Zvi, O., Wangpraseurt, D., Bronstein, O., Eyal, G., & Loya, Y. (2021). Photosynthesis and bio-optical properties of fluorescent mesophotic corals. Frontiers in Marine Science, 8, 389. doi: 10.3389/fmars.2021.651601

Ben-Zvi, O., Ofer, E., Eyal, G., & Loya, Y. (2020). Experimental evidence of temperature-induced bleaching in two fluorescence morphs of a Red Sea mesophotic coral. Coral Reefs, 1-13. doi: 10.1007/s00338-020-02027-0

Ben-Zvi, O., Eyal, G., & Loya, Y. (2015). Light-dependent fluorescence in the coral Galaxea fascicularis. Hydrobiologia, 759(1), 15-26. doi: 10.1007/s10750-014-2063-6.

Betti, F., Bavestrello, G., & Cattaneo-Vietti, R. (2021). Preliminary evidence of fluorescence in Mediterranean heterobranchs. Journal of Molluscan Studies, 87(1), eyaa040.  doi: 10.1093/mollus/eyaa040

Bierman, T. V., Vrieling, K., van Zwieten, R., Kodger, T. E., Macel, M., & Bezemer, T. M. (2024). Adhesive droplets made from plant-derived oils for control of western flower thrips. Journal of Pest Science, 1-12.

Birling, M.-C., A. Dierich, S. Jacquot, Y. Hérault, and G. Pavlovic, 2012. Highly-efficient, fluorescent, locus directed Cre and FlpO deleter mice on a pure C57BL/6N genetic background. Genesis, 50(6): 482–489.

Bitzenhofer, S. H., Pöpplau, J. A., Chini, M., Marquardt, A., & Hanganu-Opatz, I. L. (2021). A transient developmental increase in prefrontal activity alters network maturation and causes cognitive dysfunction in adult mice. Neuron, 109(8), 1350-1364.

Bitzenhofer, S. H., Ahlbeck, J., Wolff, A., Wiegert, J. S., Gee, C. E., Oertner, T. G., & Hanganu-Opatz, I. L. (2017). Layer-specific optogenetic activation of pyramidal neurons causes beta–gamma entrainment of neonatal networks. Nature Communications, 8, 14563.

Bitzenhofer, S. H., Ahlbeck, J., & Hanganu-Opatz, I. L. (2017). Methodological Approach for Optogenetic Manipulation of Neonatal Neuronal Networks. Frontiers in Cellular Neuroscience, 11, 239. doi: 10.3389/fncel.2017.00239

Bitzenhofer, S. H., Poepplau, J. A., Chini, M., Marquardt, A., & Hanganu-Opatz, I. (2019). Activity-dependent maturation of prefrontal gamma oscillations sculpts cognitive performance. bioRxiv, 558957.

Bitzenhofer, S. H., Poepplau, J. A., & Hanganu-Opatz, I. L. (2020). Gamma activity accelerates during prefrontal development. BioRxiv.

Blaze, J., Navickas, A., Phillips, H. L., Heissel, S., Plaza-Jennings, A., Miglani, S., … & Akbarian, S. (2021). Neuronal Nsun2 deficiency produces tRNA epitranscriptomic alterations and proteomic shifts impacting synaptic signaling and behavior. Nature Communications, 12(1), 1-16.

Bohlen, M., & Tremblay, S. (2023). Considerations for the Use of Viral Vectors in Nonhuman Primates. In Vectorology for Optogenetics and Chemogenetics (pp. 293-329). New York, NY: Springer US.

Boldock, L., Inzoli, A., Bonardelli, S., Hsiao, S., Marzo, A., Narracott, A., … & CM, P. (2022). Integrating particle tracking with computational fluid dynamics to assess haemodynamic perturbation by coronary artery stents. PloS one, 17(7), e0271469. LINK

Bollati, E., D’Angelo, C., Kline, D. I., Mitchell, B. G., & Wiedenmann, J. (2021). Development of a multi-excitation fluorescence (MEF) imaging method to improve the information content of benthic coral reef surveys. Coral Reefs, 1-17.

Bollati, E., D’Angelo, C., Alderdice, R., Pratchett, M., Ziegler, M., & Wiedenmann, J. (2020). Optical feedback loop involving dinoflagellate symbiont and scleractinian host drives colourful coral bleaching. Current Biology, 30. 1-13.

Bollinger, L., & Dickie, R. (2021). Low-Cost Fluorescent Microvascular Visualization in Ambystoma mexicanum. Microscopy and Microanalysis, 27(S1), 3160-3162. doi:10.1017/S143192762101093X

Bonaldo, R. M., Pires, M. M., Junior, P. R. G., Hoey, A. S., & Hay, M. E. (2017). Small Marine Protected Areas in Fiji Provide Refuge for Reef Fish Assemblages, Feeding Groups, and Corals. PloS one, 12(1), e0170638.

Borghi, S., Clements, M., Webb, M., Bostock, H., Webster, J. M., McNeil, M., … & Byrne, M. (2023). Discovery of the dendrophylliid scleractinian Heteropsammia cochlea (Spengler, 1781) in Halimeda bioherms of the Northern Great Barrier Reef. Marine Biodiversity, 53(3), 39. Open access

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) with a Dino-Lite digital microscope to image the fluorescence of coral polyps and confirm the presence of zooxanthellae.

Bouderlique, T., Petersen, J., Faure, L., Abed-Navandi, D., Bouchnita, A., Mueller, B., … & Adameyko, I. (2022). Surface flow for colonial integration in reef-building corals. Current Biology. doi: 10.1016/j.cub.2022.04.054

Bouton, C., King, R. C., Chen, H., Azhakanandam, K., Bieri, S., Hammond-Kosack, K. E., & Kanyuka, K. (2018). Foxtail mosaic virus: A viral vector for protein expression in cereals. Plant Physiology, pp-01679. doi: 10.1104/pp.17.01679

Bowen, M. E., Mulligan, A. S., Sorayya, A., & Attardi, L. D. (2021). Puma-and Caspase9-mediated apoptosis is dispensable for p53-driven neural crest-based developmental defects. Cell Death & Differentiation, 1-12. doi: 10.1038/s41418-021-00738-7

Brands, M., Cahoon, E., & Doermann, P. (2020). Palmitvaccenic acid (Δ11-cis-hexadecenoic acid) is synthesized by an OLE1-like desaturase in the arbuscular mycorrhiza fungus Rhizophagus irregularis. bioRχiv. doi: 10.1101/2020.01.13.901264

Brentjens, E. T., Beall, E. A., & Zucker, R. M. (2023). Analysis of Microcystis aeruginosa physiology by spectral flow cytometry: Impact of chemical and light exposure. PLOS Water, 2(10), e0000177.

Brinsko‐Beckert, K., & Palenik, C. S. (2020). The Analysis of 3D Printer Dust for Forensic Applications. Journal of Forensic Sciences. doi: 10.1111/1556-4029.14486

• Used the Stereo Microscope Fluorescence Adapter SFAZ-UV (Ultraviolet) on a Leica EZ4 microscope to screen samples.

Brown, T. C., Bond, C. E., & Hoover, D. B. (2018). Variable expression of GFP in different populations of peripheral cholinergic neurons of ChAT^BAC-eGFP transgenic mice. Autonomic Neuroscience: Basic and Clinical. 210, 44-54. doi: 10.1016/j.autneu.2017.12.005

Bubnell, J. E., Fernandez-Begne, P., Ulbing, C. K., & Aquadro, C. F. (2021) Genetic variation among wMel strains of Wolbachia pipientis differentially rescues a bag of marbles partial loss of function mutant in Drosophila melanogaster. bioRxiv, 2021-01.

• Used the Stereo Microscope Fluorescence Adapter SFAZ-GR (Greeen excitation) to screen for the eye color cassette in F1 larvae, bam^{null-In2-3xP3-DsRed}.

Bui, S., Dalvin, S., Vågseth, T., Oppedal, F., Fossøy, F., Brandsegg, H., … & Skern‐Mauritzen, R. (2021). Finding the needle in the haystack: Comparison of methods for salmon louse enumeration in plankton samples. Aquaculture Research. doi: 10.1111/are.15202

Bulleri, F., Thiault, L., Mills, S. C., Nugues, M. M., Eckert, E. M., Corno, G., & Claudet, J. (2018). Erect macroalgae influence epilithic bacterial assemblages and reduce coral recruitment. Marine Ecology Progress Series, 597, 65-77.

Bunce, C., Barske, L., Zhang, G., & Capel, B. (2023). Biased precursor ingression underlies the center-to-pole pattern of male sex determination in mouse. Development, 150(5), dev201060.

Byrd, K. M., Piehl, N. C., Patel, J. H., Huh, W. J., Sequeira, I., Lough, K. J., … & Williams, S. E. (2019). Heterogeneity within Stratified Epithelial Stem Cell Populations Maintains the Oral Mucosa in Response to Physiological Stress. Cell Stem Cell, 25(6), 814-829.

• Used the Model DFP-1 Dual Fluorescent Protein Flashlight to select GFP-positive mouse pups at birth.

Cabrera, L. P., Etxeberria, E., Gonzalez, P., & Reyes, T. F. (2023). Use of non-intrusive laser exfoliation to improve substance uptake into citrus leaves. F1000Research, 12.

Cai, D., Zhang, Z., Zhao, L., Liu, J., & Chen, H. (2023). A novel hybrid seed production technology based on a unilateral cross-incompatibility gene in maize. Science China Life Sciences, 66(3), 595-601.

Canhos, L. L. (2018). Regenerative capacity of reactive astrocytes in vitro and in vivo. Doctoral dissertation, Graduate School of Systemic Neurosciences der Ludwig-Maximilians-Universität München.

Cao, E., Watt, M. J., Nowell, C. J., Quach, T., Simpson, J. S., De Melo Ferreira, V., … & Trevaskis, N. L. (2021). Mesenteric lymphatic dysfunction promotes insulin resistance and represents a potential treatment target in obesity. Nature Metabolism, 1-14.

Cardona, A., & Santamarina, J. C. (2023). Immiscible imbibition in fractured media: A dual-porosity microfluidics study. International Journal of Rock Mechanics and Mining Sciences, 170, 105555. LINK

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) to image Sulforhodamine G dye used as a fluorescent tracer in a study of water uptake in the pore networks formed in fractured rocks.

Cashman, M. A., Ho, K. T., Boving, T. B., Russo, S., Robinson, S., & Burgess, R. M. (2020). Comparison of microplastic isolation and extraction procedures from marine sediments. Marine Pollution Bulletin, 159, 111507. doi: 10.1016/j.marpolbul.2020.111507

• Used the Stereo Microscope Fluorescence Adapter SFA-UV (Ultraviolet) and SFA-CY (Cyan) on a Nikon SMZ745-T to screen samples for microplastic particles both ‘raw’ and with Nile red staining.

Cashman, M. A., Langknecht, T., El Khatib, D., Burgess, R. M., Boving, T. B., Robinson, S., & Ho, K. T. (2022). Quantification of microplastics in sediments from Narragansett Bay, Rhode Island USA using a novel isolation and extraction method. Marine Pollution Bulletin, 174, 113254. doi: 10.1016/j.marpolbul.2021.113254

Castellanos‑Arévalo, A. P., Estrada‑Luna, A. A., Cabrera‑Ponce, J. L., Valencia‑Lozano, E., Herrera‑Ubaldo, H., de Folter, S., … & Délano‑Frier, J. P. (2020) Agrobacterium rhizogenes‑mediated transformation of grain (Amaranthus hypochondriacus) and leafy (A. hybridus) amaranths. Plant Cell Reports. doi: 10.1007/s00299-020-02553-9

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) on a Zeiss Stemi 2000-C stereo microscope to screen for GFP expression in roots, calli and emerging embryos on petri dishes.

Ceccarelli, M., D’Andrea, G., Micheli, L., & Tirone, F. (2020). Deletion of Btg1 Induces Prmt1-Dependent Apoptosis and Increased Stemness in Shh-Type Medulloblastoma Cells Without Affecting Tumor Frequency. Frontiers in Oncology, 10.

• Used the BlueStar Flashlight to select GFP-positive mouse pups.

Cetz-Navarro, N. P., Espinoza-Avalos, J., Vega-Zepeda, A., Cerón-Flores, A. I., Raigoza-Figueras, R., & Carpizo-Ituarte, E. D. J. (2016). Reclutamiento del coral Acropora palmata sobre sustratos de dos materiales. Revista de biología marina y oceanografía, 51(3), 643-653.

Chalfant, J. M., Cooper, R., Aguayo-Williams, T., Holtzclaw, L., Loveless, M., Wilson, J., & Harrison, D. (2022). Revisiting Mendel: Use of a behavioral assay to examine inheritance of traits in Drosophila. Publication of the Association for Biology Laboratory Education, 42, 56.

Champer, J., Yang, E., Lee, E., Liu, J., Clark, A. G., & Messer, P. W. (2020). A CRISPR homing gene drive targeting a haplolethal gene removes resistance alleles and successfully spreads through a cage population. Proceedings of the National Academy of Sciences. doi: 10.1073/pnas.2004373117

Champer, J., Chung, J., Lee, Y. L., Liu, C., Yang, E., Wen, Z., … & Messer, P. W. (2018). Molecular safeguarding of CRISPR gene drive experiments. bioRxiv, 411876.

Champer, J., Wen, Z., Luthra, A., Reeves, R., Chung, J., Liu, C., … & Clark, A. G. (2019). CRISPR Gene Drive Efficiency and Resistance Rate Is Highly Heritable with No Common Genetic Loci of Large Effect. Genetics, genetics-302037.

• Used the Stereo Microscope Fluorescence Adapter SFA-GR (Green) to screen for DsRed expression in the eyes of Drosophila.

Champer, J., Reeves, R., Oh, S. Y., Liu, C., Liu, J., Clark, A. G., & Messer, P. W. (2017). Novel CRISPR/Cas9 gene drive constructs reveal insights into mechanisms of resistance allele formation and drive efficiency in genetically diverse populations. PLoS Genetics, 13(7), e1006796.

Champer, J., Chung, J., Lee, Y. L., Liu, C., Yang, E., Wen, Z., Clark, A. G., & Messer, P. W. (2019). Molecular safeguarding of CRISPR gene drive experiments. eLife, 8, e41439.

Champer, J., Lee, E., Yang, E., Liu, C., Clark, A. G., & Messer, P. W. (2020). A toxin-antidote CRISPR gene drive system for regional population modification. Nature Communications, 11(1), 1-10.

Champer, J., Yang, E., Lee, Y. L., Liu, J., Clark, A. G., & Messer, P. W. (2019). Resistance is futile: A CRISPR homing gene drive targeting a haplolethal gene. bioRxiv, 651737.

Chang, H., Pan, Y., Landrette, S., Ding, S., Yang, D., Liu, L., … & Xu, T. (2019). Efficient genome-wide first-generation phenotypic screening system in mice using the piggyBac transposon. Proceedings of the National Academy of Sciences, 116(37), 18507-18516.

Charlesworth, C. T., Homma, S., Suchy, F., Wang, S., Bhadhury, J., Amaya, A. K., … & Nakauchi, H. (2024). Secreted Particle Information Transfer (SPIT)-A Cellular Platform For In Vivo Genetic Engineering. bioRxiv, 2024-01.

Chatterjee, D., Wittmeyer, K., Lee, T. F., Cui, J., Yennawar, N. H., Yennawar, H. P., … & Chopra, S. (2021). Maize unstable factor for orange1 is essential for endosperm development and carbohydrate accumulation. Plant Physiology.

Chen, D. S., Clark, A. G., & Wolfner, M. F. (2022). Octopaminergic/tyraminergic Tdc2 neurons regulate biased sperm usage in female Drosophila melanogaster. bioRxiv.

Chen, H., He, D., & Lasek, A. W. (2017). Midkine in the Mouse Ventral Tegmental Area Limits Ethanol Intake and Ccl2 Gene Expression. Genes, Brain and Behavior, 16(7), 699-708.

Chen, X., & Palli, S. R. (2022). Development of multiple transgenic CRISPR/Cas9 methods for genome editing in the fall armyworm, Spodoptera frugiperda. Journal of Pest Science, 1-14. doi: 10.1007/s10340-022-01546-9

Chen, J., Xu, X., & Champer, J. (2023). Assessment of distant-site rescue elements for CRISPR toxin-antidote gene drives. Frontiers in Bioengineering and Biotechnology, 11, 1138702.

Cheng, M., Pei, D., He, X., Liu, Y., Zhu, P., & Yan, X. (2021) Hydrolytic dehalogenation operon of 4-chlorobenzoate is transcriptionally regulated by the TetR-type repressor FcbR and its ligand 4-chlorobenzoyl-CoA. Applied and Environmental Microbiology. doi: 10.1128/AEM.02652-20

Cheng, M., Pei, D., He, X., Liu, Y., Zhu, P., & Yan, X. (2021). The Operon Encoding Hydrolytic Dehalogenation of 4-Chlorobenzoate Is Transcriptionally Regulated by the TetR-Type Repressor FcbR and Its Ligand 4-Chlorobenzoyl Coenzyme A. Applied and Environmental Microbiology, 87(6), e02652-20.

Cheng, M., Xing, Z., Lu, L., Chen, F., He, J., & Huang, X. (2020). A plasmid-based genomic screening system for transcriptional regulators of non-adjacent xenobiotic catabolism genes. Applied Microbiology and Biotechnology, 104(3), 1163-1174.

Chen, W., Guo, J., Liu, Y., & Champer, J. (2023). Population suppression by release of insects carrying a dominant sterile homing gene drive targeting doublesex in Drosophila. bioRxiv, 2023-07.

Cheng, Y., Jiang, Y., Ren, Z., Fu, Y., & Xu, C. (2021). Development of an in vivo methylation system for transformation of Ruminiclostridium cellulolyticum. Journal of Applied Microbiology. doi: 10.1111/jam.15367

Chever, O., Zerimech, S., Scalmani, P., Lemaire, L., Pizzamiglio, L., Loucif, A., … & Mantegazza, M. (2021). Initiation of migraine-related cortical spreading depolarization by hyperactivity of GABAergic neurons and Na_V1.1 channels. The Journal of Clinical Investigation, 131(21). doi: 10.1172/JCI142203

• Used the Model DFP-1 Dual Fluorescent Protein Flashlight to identify tdTomato-positive mouse pups, and to confirm its expression in brain and other tissue slices.

Chini, M., Lindemann, C., Poepplau, J. A., Xu, X., Ahlbeck, J., Bitzenhofer, S. H., … & Hanganu-Opatz, I. L. (2018). Microglia inhibition rescues developmental hypofrontality in a mouse model of mental illness. bioRxiv, 254656.

Chini, M., Pöpplau, J. A., Lindemann, C., Carol-Perdiguer, L., Hnida, M., Oberländer, V., … & Hanganu-Opatz, I. L. (2020). Resolving and rescuing developmental miswiring in a mouse model of cognitive impairment. Neuron, 105(1), 60-74.

Chow, M. H., Tsang, R. H., Lam, E. K., & Ang, P. (2016). Quantifying the degree of coral bleaching using digital photographic technique. Journal of Experimental Marine Biology and Ecology, 479, 60-68.

Chuang, L., Enders, A., Offermann, S., Bahnemann, J., & Franke, J. (2022). 3D‐printed autoclavable plant holders to facilitate large‐scale protein production in plants. Engineering in Life Sciences. doi: 10.1002/elsc.202200001.  LINK

• Used the Xite-RB-GO (Royal Blue with bandpass filter glasses) identify and photograph GFP expression in leaves of the Australian tobacco plant, Nicotiana benthamiana.

Chui, A. P. Y., & Ang Jr, P. (2017). Recruitment failure of scleractinian corals in a subtropical marginal environment: Three-year monitoring in a Hong Kong marine park. Marine Pollution Bulletin, 124(2), 668-677.

Chung, W. S., Kurniawan, N. D., & Marshall, N. J. (2021). Comparative brain structure and visual processing in octopus from different habitats. Current Biology. doi: 10.1016/j.cub.2021.10.070

Clare, A. J., Wicky, H. E., Empson, R. M., & Hughes, S. M. (2017). RNA-Sequencing Analysis Reveals a Regulatory Role for Transcription Factor Fezf2 in the Mature Motor Cortex. Frontiers in Molecular Neuroscience, 10, 283. doi: 10.3389/fnmol.2017.00283

Clément, B., King, R. C., Chen, H., Azhakanandam, K., Bieri, S., Hammond-Kosack, K. E., & Kanyuka, K. (2018). Foxtail mosaic virus: A viral vector for protein expression in cereals. Plant Physiology, doi: 10.1104/pp.17.01679

Coelho-Santos, V., Berthiaume, A. A., Ornelas, S., Stuhlmann, H., & Shih, A. Y. (2021). Imaging the construction of capillary networks in the neonatal mouse brain. Proceedings of the National Academy of Sciences, 118(26). doi: 10.1073/pnas.2100866118

Cohen, K. E., & Summers, A. P. (2022). Dimorphic Fluorescence in the Pacific Spiny Lumpsucker. Ichthyology & Herpetology, 110(2), 350-353. doi: 10.1643/i2021019

Cole, J., Ferguson, A., Segarra, V. A., & Walsh, S. (2017). Rolling Circle Mutagenesis of GST-mCherry to Understand Mutation, Gene Expression, and Regulation. Journal of Microbiology & Biology Education, 18(1). doi:10.1128/jmbe.v18i1.1201 (link to pdf)

Coles, C., & Lasek, A. W. (2021). Binge-Like Ethanol Drinking Increases Otx2, Wnt1, and Mdk Gene Expression in the Ventral Tegmental Area of Adult Mice. Neuroscience Insights, 16. doi: 10.1177/26331055211009850

Cornett, J.C., S. F. Landrette, and T. Xu, 2011. Characterization of fluorescent eye markers for mammalian transgenic studies. PLoS ONE 6(12): e29486.

Correia, M. J., Lopes, P. M., Santos, P. M., Jacinto, D., Mateus, D., Maresca, F., … & Costa, J. L. (2023). Pilot studies for stock enhancement of purple sea urchins (Paracentrotus lividus, Lamarck, 1816): usefulness of refuges and calcein marking for the monitoring of juveniles released into the natural environment. Aquatic Living Resources, 36, 12.  LINK

Courte, J., Le, N. A., Pan, T., Bousset, L., Melki, R., Villard, C., & Peyrin, J. M. (2023). Synapses do not facilitate prion-like transfer of alpha-synuclein: a quantitative study in reconstructed unidirectional neural networks. Cellular and Molecular Life Sciences, 80(10), 284.

Cox, J. L., & Fitzpatrick, B. M. (2023). Biofluorescent sexual dimorphism revealed in a southern Appalachian endemic salamander, Plethodon metcalfi. Scientific Reports, 13(1), 3588. Open access

Crofton, E. J., Nenov, M. N., Zhang, Y., Scala, F., Page, S. A., McCue, D. L., … & Green, T. A. (2017). Glycogen synthase kinase 3 beta alters anxiety-, depression-, and addiction-related behaviors and neuronal activity in the nucleus accumbens shell. Neuropharmacology.

Cui, C., Song, Y., Liu, J., Ge, H., Li, Q., Huang, H., … & Zhang, Y. (2015). Gene targeting by TALEN-induced homologous recombination in goats directs production of β-lactoglobulin-free, high-human lactoferrin milk. Scientific Reports, 5, Article number: 10482. doi:10.1038/srep10482. Open access

• Used the Model DFP-1 Dual Fluorescent Protein Flashlight to identify GFP-positive goats.

Cui, X., D. Ji, D. A Fisher, Y. Wu, D. M Briner, and E. J. Weinstein, 2011. Targeted integration in rat and mouse embryos with zinc-finger nucleases. Nature Biotechnology 29: 64–67.

Cullen, C. L., O’Rourke, M., Beasley, S. J., Auderset, L., Zhen, Y., Pepper, R. E., … & Young, K. M. (2020) Kif3a deletion prevents primary cilia assembly on oligodendrocyte progenitor cells, reduces oligodendrogenesis and impairs fine motor function. Glia. 10.1002/glia.23957

• Used the BlueStar flashlight to genotype Pdgfrα-histGFP and Sox10-GFP mice for GFP expression at P0.

Czyzewski, B. D., & McGraw, B. A. (2018). Detection of Listronotus maculicollis (Coleoptera: Curculionidae) Turfgrass Canopy Activity With the Use of a Novel Fluorescent Marking System Suggests Opportunities for Improved Mechanical Control. Environmental Entomology, 47(6), 1525-1531.

D’Angelo, C., A. Denzel, A. Vogt, M. V. Matz, F. Oswald, A. Salih, G. U. Nienhaus, and J. Wiedenmann, 2008. Blue light regulation of host pigment in reef-building corals. Mar. Ecol. Prog. Ser., 364:97-106.

D’Angelo, C., E. G. Smith, F. Oswald, J. Burt, D. Tchernov and J. Wiedenmann, 2012. Locally accelerated growth is part of the innate immune response and repair mechanisms in reef-building corals as detected by green fluorescent protein (GFP)-like pigments. Coral Reefs, Vol. 31.

D’Costa, S., L. Borst, and Y. Kim, 2013. Bone marrow-derived cells participate in the formation of normal and neoplastic lung stroma. Anticancer Research, 33(3): 831-836.

De Brauwer, M., Hobbs, J. P. A., Ambo‐Rappe, R., Jompa, J., Harvey, E. S., & McIlwain, J. L. (2017). Biofluorescence as a survey tool for cryptic marine species. Conservation Biology, 32(3): 706-715. doi: 10.1111/cobi.13033

De Brauwer, M., Hobbs, J. P. A., & Jompa, J. (2020). Widespread low abundance despite habitat availability elevates extinction risk in pygmy seahorses. Coral Reefs, 1-6.

• Used the Sola NIGHTSEA light for underwater search for specimens.

de Carvalho, G. G., Pires, A. C., & de Sousa, F. B. (2019). Influence of infiltrant application time on the reduction of opaqueness of proximal enamel caries. Indian Journal of Dental Research, 30(1), 52.

de Koning, R., Daryanavard, H., Garmyn, J., Kiekens, R., Toili, M. E. M., & Angenon, G. (2023). Fine-tuning CRISPR/Cas9 gene editing in common bean (Phaseolus vulgaris L.) using a hairy root transformation system and in silico prediction models. Frontiers in Plant Science, 14, 1233418.

• Used the SFA-RB-GO (Royal Blue excitation with green bandpass filter) stereomicroscope adapter to screen for GFP expression in transgenic hairy roots.

De Santa, F., Strimpakos, G., Marchetti, N., Gargari, G., Torcinaro, A., Arioli, S., … & Farioli-Vecchioli, S. (2024). Effect of a multi-strain probiotic mixture consumption on anxiety and depression symptoms induced in adult mice by postnatal maternal separation. Microbiome, 12(1), 29.

DiFonzo, C. D. (2022). Western bean cutworm (Lepidoptera: Noctuidae) feeding and development on industrial hemp in the laboratory and field. The Great Lakes Entomologist, 55(1), 4.

Domínguez-Robles, J., Shen, T., Cornelius, V. A., Corduas, F., Mancuso, E., Donnelly, R. F., … & Larrañeta, E. (2021). Development of drug loaded cardiovascular prosthesis for thrombosis prevention using 3D printing. Materials Science and Engineering: C, 112375.

Domínguez-Robles, J., Stewart, S. A., Rendl, A., González, Z., Donnelly, R. F., & Larrañeta, E. (2019). Lignin and Cellulose Blends as Pharmaceutical Excipient for Tablet Manufacturing via Direct Compression. Biomolecules, 9(9), 423. doi:10.3390/biom9090423

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) mounted on a Leica EZ4 D to evaluate the distribution of tetracycline (the model drug). More info in this article.

Domínguez-Robles, J., Utomo, E., Cornelius, V. A., Anjani, Q. K., Korelidou, A., Gonzalez, Z., … & Larrañeta, E. (2022). TPU-based antiplatelet cardiovascular prosthesis prepared using fused deposition modelling. Materials & Design, 110837. doi: 10.1016/j.matdes.2022.110837

Dong, J., et al., 2012. Incubation and application of transgenic green fluorescent nude mice in visualization studies on glioma tissue remodeling. Chinese Medical Journal, 125 (24): 4349-4354.

Du, J., Chen, W., Jia, X., Xu, X., Yang, E., Zhou, R., … & Champer, J. (2023). New germline Cas9 promoters show improved performance for homing gene drive. bioRxiv, 2023-07.

Dumrongprechachan, V., Salisbury, R. B., Soto, G., Kumar, M., MacDonald, M. L., & Kozorovitskiy, Y. (2021). Cell-type and subcellular compartment-specific APEX2 proximity labeling reveals activity-dependent nuclear proteome dynamics in the striatum. Nature Communications, 12(1), 1-16.

Dunn, C., Owens, J., Fears, L., Nunnerley, L., Kirby, J., Armstrong, O., … & Antwis, R. (2020). An affordable methodology for quantifying waterborne microplastics – an emerging contaminant in inland-waters. Journal of Limnology. doi: 10.4081/jlimnol.2019.1943  Open access

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) to assist in finding microplastics in filtered samples.

Dussert, S., Guerin, C., Andersson, M., Joët, T., Tranbarger, T. J., Pizot, M., … & Morcillo, F. (2013). Comparative transcriptome analysis of three oil palm fruit and seed tissues that differ in oil content and fatty acid composition. Plant Physiology, 162(3), 1337-1358.

El-Dougdoug, N. K., Magistrado, D., & Short, S. M. (2024). An obligate microsporidian parasite modulates defense against opportunistic bacterial infection in the yellow fever mosquito, Aedes aegypti. Msphere, e00678-23.

Elmer, F., Bell, J. J., & Gardner, J. P. (2018) Coral larvae change their settlement preference for crustose coralline algae dependent on availability of bare space. Coral Reefs, 1-11. doi:10.1007/s00338-018-1665-2

Endicott, S. J., Ziemba, Z. J., Beckmann, L. J., Boynton, D. N., & Miller, R. A. (2020). Inhibition of class I PI3K enhances chaperone-mediated autophagy. Journal of Cell Biology, 219(12). doi: 10.1083/jcb.202001031

• Used the Violet LED in a DFP-VR Dual Fluorescent Protein flashlight for Dendra2 photoconversion.

Essock-Burns, T., Lawhorn, S., Wu, L., McClosky, S., Moriano-Gutierrez, S., Ruby, E. G., & McFall-Ngai, M. J. (2023). Maturation state of colonization sites promotes symbiotic resiliency in the Euprymna scolopes-Vibrio fischeri partnership. Microbiome, 11(1), 1-16.

Eyal-Shaham, L., Eyal, G., Ben-Zvi, O., Sakai, K., Harii, S., Sinniger, F., … & Shlesinger, T. (2020). A unique reproductive strategy in the mushroom coral Fungia fungites. Coral Reefs. doi: 10.1007/s00338-020-02004-7

Eyal G, Wiedenmann J, Grinblat M, D’Angelo C, Kramarsky-Winter E, Treibitz T, et al. (2015) Spectral Diversity and Regulation of Coral Fluorescence in a Mesophotic Reef Habitat in the Red Sea. PLoS ONE 10(6): e0128697. doi:10.1371/journal.pone.0128697. Open access

Fang, F., Yang, W., Florio, J. B., Rockenstein, E., Spencer, B., Orain, X. M., … & Rissman, R. A. (2017). Synuclein impairs trafficking and signaling of BDNF in a mouse model of Parkinson’s disease. Scientific Reports, 7(1), 3868.

Farioli-Vecchioli, S., I. Cina, M. Ceccarelli, L. Micheli, L. Leonardi, M. T. Ciotti, M. De Bardi, C. Di Rocco, R. Pallini, S. Cavallaro, and F. Tirone, 2012. Tis21 knock-out enhances the frequency of medulloblastoma in Patched1 heterozygous mice by inhibiting the Cxcl3-dependent migration of cerebellar neurons. Journal of Neuroscience, 32(44): 15547-15564. Link

Farzaneh, F., Mirzapoor, Z., Jahangirian, E., Heidari, F., Hashemi, E., Rahim-Tayefeh, A., … & Shamsara, M. (2019). The chicken hypersensitive site-4 insulator cannot fully shield the murine phosphoglycerate kinase-1 promoter from integration site effects in transgenic mice. 3 Biotech, 9(7), 255.

Felker, A., & Mosimann, C. (2016). Contemporary zebrafish transgenesis with Tol2 and application for Cre/lox recombination experiments. Methods in Cell Biology. In Press. doi:10.1016/bs.mcb.2016.01.009

Fernández-Piñán S., Sànchez-Guirado C., Figueras M., Serra O. (2021) Gene Downregulation in Potato Roots Using Agrobacterium rhizogenes-Mediated Transformation. In: Dobnik D., Gruden K., Ramšak Ž., Coll A. (eds) Solanum tuberosum. Methods in Molecular Biology, vol 2354. Humana, New York, NY. doi: 10.1007/978-1-0716-1609-3_17

Fernández-Piñán, S., López, J., Armendariz, I., Boher, P., Figueras, M., & Serra, O. (2019). Agrobacterium tumefaciens and Agrobacterium rhizogenes-Mediated Transformation of Potato and the Promoter Activity of a Suberin Gene by GUS Staining. JoVE (Journal of Visualized Experiments), (145), e59119.

Ferrante, D., Sterlini, B., Prestigio, C., Marte, A., Corradi, A., Onofri, F., … & Baldelli, P. (2021). PRRT2 modulates presynaptic Ca2+ influx by interacting with P/Q-type channels. Cell Reports, 35(11), 109248.

Ferreira, S., Pitman, K. A., Wang, S., Summers, B. S., Bye, N., Young, K. M., & Cullen, C. L. (2020). Amyloidosis is associated with thicker myelin and increased oligodendrogenesis in the adult mouse brain. Journal of Neuroscience Research. doi: 10.1002/jnr.24672

• Used the BlueStar flashlight to identify Pdgfrα-H2BGFP transgene expression in the heads of mice.

Feygels, V. I., J. Y. Park, J. Aitken, M. Kim, A. Payment, and V. Ramnath, 2012. Coastal Zone Mapping and Imaging Lidar (CZMIL): first flights and system validation. Proc. SPIE 8532, Remote Sensing of the Ocean, Sea Ice, Coastal Waters, and Large Water Regions.

Fibbe, M. C., Carroll, D., Gowans, S., & Siuda, A. N. (2023). Ingestion of microplastics by copepods in Tampa Bay Estuary, FL. Frontiers in Ecology and Evolution, 11, 305.

Fiegel, L. J., Kellermann, M. Y., Nietzer, S., Petersen, L. E., Smykala, M., Bickmeyer, U., & Schupp, P. J. (2023). Detailed visualization of settlement and early development in Leptastrea purpurea reveals distinct bio-optical features. Frontiers in Marine Science, 10.

Flowers, B. M., Xu, H., Mulligan, A. S., Hanson, K. J., Seoane, J. A., Vogel, H., … & Attardi, L. D. (2021). Cell of Origin Influences Pancreatic Cancer Subtype. Cancer Discovery, 11(3), 660-677.

Ford, A. K., Van Hoytema, N., Moore, B. R., Pandihau, L., Wild, C., & Ferse, S. C. (2017). High sedimentary oxygen consumption indicates that sewage input from small islands drives benthic community shifts on overfished reefs. Environmental Conservation, 1-7.

• Used the GoBe NIGHTSEA light to locate juvenile corals in situ.

Ford, A. K., Eich, A., McAndrews, R. S., Mangubhai, S., Nugues, M. M., Bejarano, S., … & Ferse, S. C. (2018). Evaluation of coral reef management effectiveness using conventional versus resilience-based metrics. Ecological Indicators, 85, 308-317. doi: 10.1016/j.ecolind.2017.10.002

Frazier, J., Bertout, J. A., Kerwin, W. S., Moreno-Gonzalez, A., Casalini, J. R., Grenley, M. O., … & Tretyak, I. (2017). Multi-drug analyses in patients distinguish efficacious cancer agents based on both tumor cell killing and immunomodulation. Cancer Research, 77(11), 2869-2880.

• Used the BlueStar flashlight to identify fluorescently labeled injection sites in resected soft tissue sarcomas, to select for sectioning for further study.

Friess, M. C., Kritikos, I., Schineis, P., Medina-Sanchez, J. D., Gkountidi, A. O., Vallone, A., … & Halin, C. (2022). Mechanosensitive ACKR4 scavenges CCR7 chemokines to facilitate T cell de-adhesion and passive transport by flow in inflamed afferent lymphatics. Cell Reports, 38(5), 110334.

Fulfer, V. M., & Walsh, J. P. (2023). Extensive estuarine sedimentary storage of plastics from city to sea: Narragansett Bay, Rhode Island, USA. Scientific Reports, 13(1), 10195. link

Fulton, S. L., Mitra, S., Lepack, A. E., Martin, J. A., Stewart, A. F., Converse, J., … & Maze, I. (2022). Histone H3 dopaminylation in ventral tegmental area underlies heroin-induced transcriptional and behavioral plasticity in male rats. Neuropsychopharmacology, 1-8.

• Used the Dual Fluorescent Protein flashlight to guide dissection of 2mm puches from virally infected VTA using GFP-fluorescence.

Fulton, S. L., Wenderski, W., Lepack, A. E., Eagle, A. L., Fanutza, T., Bastle, R. M., … & Maze, I. (2022). Rescue of deficits by Brwd1 copy number restoration in the Ts65Dn mouse model of Down syndrome. Nature communications, 13(1), 1-17.

Gao, F. J., Klinedinst, D., Cheng, B., Savonenko, A., Devenney, B., Li, Y., … & Reeves, R. H. (2021) Forebrain Shh overexpression improves cognitive function in a Down syndrome mouse model and euploid littermates. bioRxiv, 2021-01.

• Used the BlueStar flashlight to identify GFP-positive forebrains of P1 Camk2a-hShh live pups .

Gautam, M., Jara, J. H., Sekerkova, G., Yasvoina, M. V., Martina, M., & Özdinler, P. H. (2016). Absence of alsin function leads to corticospinal motor neuron vulnerability via novel disease mechanisms. Human Molecular Genetics, ddv631.

Gautam, M., Jara, J. H., Kocak, N., Rylaarsdam, L. E., Kim, K. D., Bigio, E. H., & Özdinler, P. H. (2019). Mitochondria, ER, and nuclear membrane defects reveal early mechanisms for upper motor neuron vulnerability with respect to TDP-43 pathology. Acta Neuropathologica, 137(1), 47-69.

Gee, J. M., Smith, N. A., Fernandez, F. R., Economo, M. N., Brunert, D., Rothermel, M., … & Tvrdik, P. (2014). Imaging Activity in Neurons and Glia with a Polr2a-Based and Cre-Dependent GCaMP5G-IRES-tdTomato Reporter Mouse. Neuron, 83(5), 1058-1072. doi: 10.1016/j.neuron.2014.07.024

Gellért, L., Luhmann, H. J., & Kilb, W. (2023). Axonal connections between S1 barrel, M1, and S2 cortex in the newborn mouse. Frontiers in Neuroanatomy, 17.

Genç, B., Lagrimas, A. K. B., Kuru, P., Hess, R., Tu, M. W., Menichella, D. M., … & Özdinler, P. H. (2015). Visualization of Sensory Neurons and Their Projections in an Upper Motor Neuron Reporter Line. PloS one, 10(7), e0132815. Link

Georgouli, M., Herraiz, C., Crosas-Molist, E., Fanshawe, B., Maiques, O., Perdrix, A., … & Karagiannis, P. (2019). Regional Activation of Myosin II in Cancer Cells Drives Tumor Progression via a Secretory Cross-Talk with the Immune Microenvironment. Cell. doi: /10.1016/j.cell.2018.12.038

Ghuman, H., Kim, K., Barati, S., & Ganguly, K. (2023). Emergence of task-related spatiotemporal population dynamics in transplanted neurons. Nature Communications, 14(1), 7320.

• Used the Xite-RB flashlight to detect fetal mouse cortices expressing GCaMP6f.

Giansante, G., Marte, A., Romei, A., Prestigio, C., Onofri, F., Benfenati, F., … & Valente, P. (2020). Presynaptic L-type Ca²⁺ channels increase glutamate release probability and excitatory strength in the hippocampus during chronic neuroinflammation. Journal of Neuroscience. doi: 10.1523/JNEUROSCI.2981-19.2020

Gildea, H. K., Frankino, P. A., Tronnes, S. U., Pender, C. L., Durieux, J., Dishart, J. G., … & Dillin, A. (2022). Glia of C. elegans coordinate a protective organismal heat shock response independent of the neuronal thermosensory circuit. Science Advances, 8(49), eabq3970.

Gilerson, A., A. Ibrahim, J. Stepinski, and S. Ahmed, 2013. Polarization of light in shallow waters. Proc. SPIE 8888, Remote Sensing of the Ocean, Sea Ice, Coastal Waters, and Large Water Regions 2013, 88880G (October 16, 2013); doi:10.1117/12.2029247.

Gilerson, A. A., J. Stepinski, et al., 2013. Benthic effects on the polarization of light in shallow waters. Applied Optics, 52(36): 8685-8705; doi:10.1364/AO.52.008685.

Gingras, A., J. Sarette, E. Shawler, T. Lee, S. Freund, E. Holwitt, and B. W. Hicks, 2013. Fluorescent proteins as biosensors by quenching resonance energy transfer from endogenous tryptophan: Detection of nitroaromatic explosives. Biosensors and Bioelectronics, 48: 251-257.

Girard, M. G., Davis, M. P., & Smith, W. L. (2020). The Phylogeny of Carangiform Fishes: Morphological and Genomic Investigations of a New Fish Clade. Copeia, 108(2), 265-298.

• Used BlueStar flashlights to photograph the fluorescence of cleared and stained specimens.

Gittins, J. R., D’Angelo, C., Oswald, F., Edwards, R. J., & Wiedenmann, J. (2015). Fluorescent protein‐mediated colour polymorphism in reef corals: multicopy genes extend the adaptation/acclimatization potential to variable light environments. Molecular Ecology, 24(2), 453-465. doi:10.1111/mec.13041 pdf

Glærum, I. L., Dunville, K., Moan, K., Krause, M., Montaldo, N. P., Kirikae, H., … & Quattrocolo, G. (2024). Postnatal persistence of hippocampal Cajal-Retzius cells has a crucial role in the establishment of the hippocampal circuit. Development, 151(1).

Goel, T., Adams, E. M., Bialas, A. L., Tran, C. M., Rowe, T., Martin, S., … & Collins, E. M. S. (2024). Nonlinear elasticity and short-range mechanical coupling govern the rate and symmetry of mouth opening in Hydra. Proceedings of the Royal Society B, 291(2017), 20232123.

Gong, S., Zhang, Y., Bao, H., Wang, X., Chang, C. H., Huang, Y. C., & Deng, W. M. (2021). Tumor Allotransplantation in Drosophila melanogaster with a programmable auto-nanoliter injector. JoVE (Journal of Visualized Experiments), (168). doi: 10.3791/62229.

Gowans, S., & Siuda, A. N. (2023). Microplastics in large marine herbivores: Florida manatees (Trichechus manatus latirostris) in Tampa Bay. Frontiers in Ecology and Evolution, 11, 1143310. LINK

Grier, Z., Soddu, M. F., Kenyatta, N., Odame, S. A., Sanders, J., Wright, L., & Anselmi, F. (2018). A low-cost do-it-yourself microscope kit for hands-on science education. In Optics Education and Outreach V (Vol. 10741, p. 107410K). International Society for Optics and Photonics.

Grinblat, M., Fine, M., Tikochinski, Y., & Loya, Y. (2018). Stylophora pistillata in the Red Sea demonstrate higher GFP fluorescence under ocean acidification conditions. Coral Reefs, 1-12. doi: 10.1007/s00338-018-1659-0.

Grinblat, M., Eyal-Shaham, L., Eyal, G., Ben-Zvi, O., Harii, S., Morita, M., … & Loya, Y. (2023). Energy allocation trade-offs as a function of age in fungiid corals. Frontiers in Marine Science, 10, 1113987. LINK

Grotz, S., Schäfer, J., Wunderlich, K. A., Ellederova, Z., Auch, H., Bähr, A., … & Klymiuk, N. (2022). Early disruption of photoreceptor cell architecture and loss of vision in a humanized pig model of usher syndromes. EMBO Molecular Medicine, 14(4), e14817. doi: 10.15252/emmm.202114817

Guerrini, G., Yerushalmy, M., Shefy, D., Shashar, N., & Rinkevich, B. (2020). Apparent recruitment failure for the vast majority of coral species at Eilat, Red Sea. Coral Reefs, 1-12. doi: 10.1007/s00338-020-01998-4

• Used the BlueStar flashlight to inspect experimental settlement surfaces for coral recruits.

Haddock, S. H., & Dunn, C. W. (2015). Fluorescent proteins function as a prey attractant: experimental evidence from the hydromedusa Olindias formosus and other marine organisms. Biology open, bio-012138.  open access

Hagler, J. R., Casey, M. T., Hull, A. M., & Machtley, S. A. (2022) Liquid fluorophore taggants for mark‐release‐recapture research: a survey of potential arthropod targets. Entomologia Experimentalis et Applicata. doi: 10.1111/eea.13191

Hammarén, M. M., Luukinen, H., Sillanpää, A., Remans, K., Lapouge, K., Custódio, T., … & Parikka, M. (2023). In vitro and ex vivo proteomics of Mycobacterium marinum biofilms and the development of biofilm-binding synthetic nanobodies. Msystems, e01073-22.

Harris, R. A., Bajo, M., Bell, R. L., Blednov, Y. A., Varodayan, F. P., Truitt, J., … & Roberts, A. J. (2016). Genetic and pharmacologic manipulation of TLR4 has minimal impact on ethanol consumption in rodents. Journal of Neuroscience, 2002-16.

Hart, J. R., 2011. Coral recruitment on a high-latitude reef at Sodwana Bay, South Africa: Research methods and dynamics. MSc thesis, University of Kwa-Zulu, Natal, 81pp.

Hartley, R., & Phoenix, T. N. (2023). MYC promotes aggressive growth and metastasis of a WNT-medulloblastoma mouse model. Developmental Neuroscience.

Hartmann, A. C., Marhaver, K. L., Chamberland, V. F., Sandin, S. A., & Vermeij, M. J. (2013). Large birth size does not reduce negative latent effects of harsh environments across life stages in two coral species. Ecology, 94(9), 1966-1976.

Hashimoto, J. G., Zhang, X., & Guizzetti, M. (2023). Ethanol-induced transcriptional and translational changes in Aldh1l1-Egfp/Rpl10a cortical astrocyte cultures. Frontiers in Neuroscience, 17, 1193304.

Hawes, S., Liang, B., Oldham, B., Song, B., Chang, L., Lin, D. T., & Cai, H. (2022). Striosomes constrain locomotor vigor with respect to an innate valence differential. bioRxiv. doi: 10.1101/2022.05.17.492302

Heller, I. S., Guenther, C. A., Meireles, A. M., Talbot, W. S., & Kingsley, D. M. (2022). Characterization of mouse Bmp5 regulatory injury element in zebrafish wound models. Bone, 155, 116263. doi: 10.1016/j.bone.2021.116263

Helmberger, M. S., Frame, M. K., & Grieshop, M. (2020). Counterstaining to separate Nile Red-stained microplastic particles from terrestrial invertebrate biomass. Environmental Science & Technology, 54(9), 5580-5588.

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) on a Leica S8 APO to view Nile red stained particles.

Helmberger, M. S., Miesel, J. R., Tiemann, L. K., & Grieshop, M. J. (2022). Soil Invertebrates Generate Microplastics From Polystyrene Foam Debris. Journal of Insect Science, 22(1), 21. doi: 10.1093/jisesa/ieac005

Helmberger, M. S., & Grieshop, M. J. (2022). Characterizing Fragmentation of Polystyrene Foam Debris by Isopods Oniscus asellus (Isopoda: Oniscidae) and Trachelipus rathkii (Isopoda: Trachelipodidae). Environmental Entomology, 51(4), 710-715. doi: 10.1093/ee/nvac052

Hidalgo, S., Fuenzalida‐Uribe, N., Molina‐Mateo, D., Escobar, A. P., Oliva, C., España, R. A., … & Campusano, J. M. (2020). Study of the release of endogenous amines in Drosophila brain in vivo in response to stimuli linked to aversive olfactory conditioning. Journal of Neurochemistry. doi: 10.1111/jnc.15109

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) on identify adult Drosophila expressing GFP in the brain.

Himmerkus, N., Q. Shan, B. Goerke, J. Hou, D. A. Goodenough, and M. Bleich, 2008. Salt and acid-base metabolism in claudin-16 knockdown mice: impact for the pathophysiology of FHHNC patients. AJP – Renal Physiol., 295(6): F1641-F1647.

Hoffman, P., Svalina, M., Flores, C., Brzezinski, C., Kushner, J. K., Staple, B., … & Alexander, A. L. (2023). Developmental Characterization of Neuronal Migration Anomalies and Axon Proliferation in mTOR pathway-associated Malformations of Cortical Development. bioRxiv, 2023-03.

Hoffman, R., 2017. The advantages of using fluorescent proteins for in vivo imaging. Current Protocols Essential Laboratory Techniques, 15, 9.6.1–9.6.24. doi: 10.1002/cpet.12

Holst, R., 2013. Evaluation of transgenic lines of field pepperweed (Lepidium campestre L.). Masters project, Swedish University of Agricultural Sciences, Dept. of Plant Breeding, 31 pp. Link to pdf

Hong, M., Jung, E., Yang, S., Jung, W., Seong, Y. J., Park, E., … & Seo, J. I. (2016). Efficient Assessment of Developmental, Surgical and Pathological Lymphangiogenesis Using a Lymphatic Reporter Mouse and Its Embryonic Stem Cells. PloS one, 11(6), e0157126.

Hong, S., Song, Y., Choi, J., & Hwang, C. (2021). Bonding of Flexible Membranes for Perfusable Vascularized Networks Patch. Tissue Engineering and Regenerative Medicine, 1-13. doi: 10.1007/s13770-021-00409-1

Hou, J., Q. Shan, T. Wang, A. S. Gomes, Q. Yan, D. L. Paul, M. Bleich, and D. A. Goodenough, 2007. Transgenic RNAi depletion of claudin-16 and the renal handling of magnesium. J. Biol. Chem., 282: 17114–17122.

Howes, T. R., Summers, B. R., & Kingsley, D. M. (2017). Dorsal spine evolution in threespine sticklebacks via a splicing change in MSX2A. BMC Biology, 15(1), 115.

Hsu C.-M., S. de Palmas, C.-Y. Kuo, V. Denis, and C. A. Chen, 2014. Identification of scleractinian coral recruits using fluorescent censusing and DNA barcoding techniques. PLoS ONE 9(9): e107366. doi:10.1371/journal.pone.0107366.

Huang, X., Jia, H., Xu, J., Wang, Y., Wen, J., & Wang, N. (2023). Efficient transgene-free genome editing in plants in the T0 generation based on a co-editing strategy. bioRxiv, 2023-03. link

Huang, Y. W. A., Zhou, B., Wernig, M., & Südhof, T. C. (2017). ApoE2, ApoE3, and ApoE4 differentially stimulate APP transcription and Aβ secretion. Cell, 168(3), 427-441. doi: 10.1016/j.cell.2016.12.044.

Hughes, J. T., Williams, M. E., Rebeiz, M., & Williams, T. M. (2021). Widespread cis‐and trans‐regulatory evolution underlies the origin, diversification, and loss of a sexually dimorphic fruit fly pigmentation trait. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. doi: 10.1002/jez.b.23068

Huh, C. Y., Goutagny, R., & Williams, S. (2010). Glutamatergic neurons of the mouse medial septum and diagonal band of Broca synaptically drive hippocampal pyramidal cells: relevance for hippocampal theta rhythm. Journal of Neuroscience, 30(47), 15951-15961.

Huie, J. M., Wainwright, D. K., Summers, A. P., & Cohen, K. E. (2022). Sticky, stickier, and stickiest-a comparison of adhesive performance in clingfish, lumpsuckers, and snailfish. Journal of Experimental Biology.

Hull, K., D. Hodgson, B. Clark, T. W. Hickok, J. N. Petitte, and P. E. Mozdziak, 2014. Lentiviral transgenesis of the leopard gecko, Eublepharis macularius. African Journal of Microbiology Research, 8(10): 1070-1079. link to pdf

Hume, B. C. C., C. D’Angelo, A. Cunnington, E. G. Smith, and J. Wiedenmann, 2013. The corallivorous flatworm Amakusaplana acroporae: an invasive species threat to coral reefs? Coral Reefs, 33(1), 267-272. doi 10.1007/s00338-013-1101-6

Hunt, M. E., 2013. Exploring the emerging properties of novel GFP-like fluorescent proteins. Master’s thesis, University of Texas, Austin. 99 pp. Link to abstract and pdf

Hunt, M. E., M. P. Scherrer, F. D. Ferrari, and M. V. Matz, 2010. Very bright green fluorescent proteins from the Pontellid copepod Pontella mimocerami. PLoS ONE 5(7): e11517.

Hunt, M. E., C. K. Modi, G. V. Aglyamova, D. V. S. Ravikant, E. Meyer and M. V. Matz, 2012. Multi-domain GFP-like proteins from two species of marine hydrozoans. Photochem. Photobiol. Sci., 11: 637-644.

Hylkema, A., Debrot, A. O., Cammenga, R. A., van der Laan, P. M., Pistor, M., Murk, A. J., & Osinga, R. (2023). The effect of artificial reef design on the attraction of herbivorous fish and on coral recruitment, survival and growth. Ecological Engineering, 188, 106882.

Imierska, M., Zabielski, P., Roszczyc-Owsiejczuk, K., Sokołowska, E., Pogodzińska, K., Kojta, I., & Błachnio-Zabielska, A. (2022). Serine Palmitoyltransferase Gene Silencing Prevents Ceramide Accumulation and Insulin Resistance in Muscles in Mice Fed a High-Fat Diet. Cells, 11(7), 1123. doi: 10.3390/cells11071123

Iskandarov, U., Silva, J. E., Kim, H. J., Andersson, M., Cahoon, R. E., Mockaitis, K., & Cahoon, E. B. (2017). Specialized Diacylglycerol Acyltransferase Contributes to Extreme Fatty Acid Content of Cuphea Seed Oil. Plant Physiology, pp-01894.

Ivarson, E., Iven, T., Sturtevant, D., Ahlman, A., Cai, Y., Chapman, K., Feussner, I., & Zhu, L. H. (2017). Production of wax esters in the wild oil species Lepidium campestre. Industrial Crops and Products, 108, 535-542.

Jarett, J., C. Fiore, C. Mazel and M. Lesser, 2013. Fluorescent epibiotic microbial community on the carapace of a Bahamian ostracod. Archives of Microbiology. Published online 17 July 2013. DOI 10.1007/s00203-013-0911-9.

Jayathilaka, E. T., Edirisinghe, S. L., Oh, C., Nikapitiya, C., & De Zoysa, M. (2023). Exosomes from Bacteria (Streptococcus parauberis) challenged olive flounder (Paralichthys olivaceus): Isolation, molecular characterization, wound healing, and regeneration activities. Fish & Shellfish Immunology, 108777.

Jia, H., Xu, J., Orbović, V., Zhang, Y., & Wang, N. (2017). Editing Citrus Genome via SaCas9/sgRNA System. Frontiers in Plant Science, 8, 2135.

Jia, H., Orbović, V., & Wang, N. (2019). CRISPR‐LbCas12a‐mediated modification of citrus. Plant Biotechnology Journal. doi: 10.1111/ pbi.13109

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) on a Zeiss Stemi SV11 to select GFP-positive leaves of Duncan grapefruit (Citrus paradisi).

Jia, H., Omar, A., Orbović, V., & Wang, N. (2022). Biallelic editing of the LOB1 promoter via CRISPR/Cas9 creates canker-resistant ‘Duncan’ grapefruit. Phytopathology, 112(2), 308-314. doi: 10.1094/PHYTO-04-21-0144-R

Jia, H., Wang, Y., Su, H., Huang, X., & Wang, N. (2022). LbCas12a-D156R Efficiently Edits LOB1 Effector Binding Elements to Generate Canker-Resistant Citrus Plants. Cells, 11(3), 315. doi: 10.3390/cells11030315

Jiang, Y., Fu, Y., Ren, Z., Gou, H., & Xu, C. (2020). Screening and application of inducible promoters in Ruminiclostridium papyrosolvens. Letters in Applied Microbiology. doi: 10.1111/lam.13352

Johns, K. A., Emslie, M. J., Hoey, A. S., Osborne, K., Jonker, M. J., & Cheal, A. J. (2018). Macroalgal feedbacks and substrate properties maintain a coral reef regime shift. Ecosphere, 9(7), e02349. doi: 10.1002/ecs2.2349

Johnston, A., C. J. McBain, and A. Fisahn, 2014. 5-Hydroxytryptamine_1A receptor-activation hyperpolarizes pyramidal cells and suppresses hippocampal gamma oscillations via Kir3 channel-activation. The Journal of Physiology, doi: 10.1113/jphysiol.2014.279083.

Joppien, M., Westphal, H., Chandra, V., Stuhr, M., & Doo, S. S. (2022). Nanoplastic incorporation into an organismal skeleton. Scientific Reports, 12(1), 1-8. doi: 10.1038/s41598-022-18547-4  open access

Jung, H., Kim, S. W., Kim, M., Hong, J., Yu, D., Kim, J. H., … & Park, B. O. (2019). Noninvasive optical activation of Flp recombinase for genetic manipulation in deep mouse brain regions. Nature Communications, 10(1), 314.

• Used the Model DFP-1 Dual Fluorescent Protein Flashlight as a light source to stimulate a photoactivatable Flp recombinase.

Jürgensen, H. J., Nørregaard, K. S., Sibree, M. M., Santoni-Rugiu, E., Madsen, D. H., Wassilew, K., … & Behrendt, N. (2019). Immune regulation by fibroblasts in tissue injury depends on uPARAP-mediated uptake of collectins. J Cell Biol, 218(1), 333-349.

Kadam, P., Ntemou, E., Onofre, J., Van Saen, D., & Goossens, E. (2019). Does co-transplantation of mesenchymal and spermatogonial stem cells improve reproductive efficiency and safety in mice?. Stem Cell Research & Therapy, 10(1), 310.

• Used the Model DFP-1 Dual Fluorescent Protein Flashlight to check for GFP and RFP expression in mouse pups.

Kahng, S. E., and A. Salih, 2005. Localization of fluorescent pigments in a nonbioluminescent, azooxanthellate octocoral suggests a photoprotective function. Coral Reefs, 24:435-436.

Kahng, S. E., E. J. Hochberg, A. Apprill, D. Wagner, D. G. Luck, D. Perez, and R. R. Bidigare, 2012. Efficient light harvesting in deep-water zooxanthellate corals. Marine Ecology Progress Series, 455: 65–77.

Kalyandurg, P. B., Tahmasebi, A., Vetukuri, R. R., Kushwaha, S. K., Lezzhov, A. A., Solovyev, A. G., … & Savenkov, E. I. (2019). Efficient RNA silencing suppression activity of Potato Mop-Top Virus 8K protein is driven by variability and positive selection. Virology, 535: 111-121. doi: 10.1016/j.virol.2019.06.018

• Used the Model DFP-1 Dual Fluorescent Protein flashlight to detect and photograph GFP expression in leaves of Nicotiana benthamiana plants.

Kancharlapalli, S. J., Crabtree, C. J., Surowiec, K., Longing, S. D., & L. Brelsfoard, C. (2021). Indirect transfer of pyriproxyfen to European honeybees via an autodissemination approach. PLOS Neglected Tropical Diseases, 15(10), e0009824.

Kancharlapalli, S. J., Surowiec, K., Longing, S. D., & Brelsfoard, C. L. (2022). Nectar source and pollinator cross contamination and persistence of pyriproxyfen associated with the use of autodissemination techniques for mosquito control. Journal of the American Mosquito Control Association. doi: 10.2987/22-7075

Kang, M., Lee, K., Finley, T., Chappell, H., Veena, V., & Wang, K. (2022). An Improved Agrobacterium-Mediated Transformation and Genome-Editing Method for Maize Inbred B104 Using a Ternary Vector System and Immature Embryos. Frontiers in Plant Science, 13, 860971-860971. doi: 10.3389/fpls.2022.860971

Karki, U., Wright, T., & Xu, J. (2022). High yield secretion of human erythropoietin from tobacco cells for ex vivo differentiation of hematopoietic stem cells towards red blood cells. Journal of Biotechnology, 355, 10-20. doi: 10.1016/j.jbiotec.2022.06.010

Kaufman, C. K., Mosimann, C., Fan, Z. P., Yang, S., Thomas, A. J., Ablain, J., … & Ciarlo, C. (2016). A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation. Science, 351(6272), aad2197.

• Used the BlueStar flashlight to observe and film GFP-fluorescent melanoma tumors on the heads of adult zebrafish.

Kazuki, Y., Gao, F. J., Li, Y., Moyer, A. J., Devenney, B., Hiramatsu, K., … & Uno, N. (2020). A non-mosaic transchromosomic mouse model of Down syndrome carrying the long arm of human chromosome 21. Elife, 9, e56223.

Kegler, P., Kegler, H. F., Gärdes, A., Ferse, S. C., Lukman, M., Hassenrück, C., … & Kunzmann, A. (2017). Bacterial biofilm communities and coral larvae settlement at different levels of anthropogenic impact in the Spermonde Archipelago, Indonesia. Frontiers in Marine Science, 4, 270.

Kelmanson, I. V., and M. V. Matz, 2003. Molecular basis and evolutionary origins of color diversity in great star coral Montastraea cavernosa (Scleractinia: Faviida). Mol. Biol. Evol., 20:1125-1133.

Kemmler, C. L., Moran, H. R., Murray, B. F., Scoresby, A., Klem, J. R., Eckert, R. L., … & Mosimann, C. (2022). Next-generation plasmids for transgenesis in zebrafish and beyond. bioRxiv.

Kenia, P. P., Julio, L. H. J., Polet, C. H. N., Benito, O., Benjamín, V. S., Alberto, M. V., & Peña-Ortega, F. (2018). Hydrogen peroxide extracellular concentration in the ventrolateral medulla and its increase in response to hypoxia in vitro: possible role of microglia. Brain Research.

Kent, M. R., Silvius, K., Kucinski, J., Calderon, D., & Kendall, G. C. (2023). Functional Genomics of Novel Rhabdomyosarcoma Fusion-Oncogenes Using Zebrafish. In Zebrafish: Methods and Protocols (pp. 23-41). New York, NY: Springer US.

Kichkailo, A. S., Narodov, A. A., Komarova, M. A., Zamay, T. N., Zamay, G. S., Kolovskaya, O. S., … & Berezovski, M. V. (2023). Development of DNA aptamers for visualization of glial brain tumors and detection of circulating tumor cells. Molecular Therapy-Nucleic Acids, 32, 267-288.

Killiny, N., Gonzalez-Blanco, P., Santos-Ortega, Y., Al-Rimawi, F., Levy, A., Hijaz, F., … & Batuman, O. (2019). Tracing Penicillin Movement in Citrus Plants Using Fluorescence-Labeled Penicillin. Antibiotics, 8(4), 262.

• Used the Stereo Microscope Fluorescence Adapter SFA-RB-GO (Royal Blue excitation with green bandpass filter to reject red chlorophyll fluorescence) on a Wild microscope to observe fluorescently labeled penicillin in plants.

Killiny, N., Nehela, Y., Hijaz, F., Gonzalez-Blanco, P., Hajeri, S., & Gowda, S. (2020). Knock-down of δ-aminolevulinic acid dehydratase via virus-induced gene silencing alters the microRNA biogenesis and causes stress-related reactions in citrus plants. Plant Science, 110622.

Kim, T. H., Hanh, B. T. B., Kim, G., Lee, D. G., Park, J. W., Lee, S. E., … & Jang, J. (2019). Thiostrepton: A Novel Therapeutic Drug Candidate for Mycobacterium abscessus Infection. Molecules, 24(24), 4511.

Knævelsrud, H., Baril, C., Gavory, G., Enserink, J. M., & Therrien, M. (2020). Rala and the exocyst control Pvr trafficking and signaling to ensure lymph gland homeostasis in Drosophila melanogaster. bioRxiv.

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) to aid in dissecting GFP-positive lymph glands.

Koh, H. Y., Jang, J., Ju, S. H., Kim, R., Cho, G. B., Kim, D. S., … & Lee, J. H. (2021). Non‐cell autonomous epileptogenesis in focal cortical dysplasia. Annals of Neurology, 90(2), 285-299. doi: 10.1002/ana.26149

Kojta, I., Zabielski, P., Roszczyc-Owsiejczuk, K., Imierska, M., Sokołowska, E., & Błachnio-Zabielska, A. (2020). GPAT Gene Silencing in Muscle Reduces Diacylglycerols Content and Improves Insulin Action in Diet-Induced Insulin Resistance. International journal of molecular sciences, 21(19), 7369. doi: 10.3390/ijms21197369

• Used the Stereo Microscope Fluorescence Adapter SFA-RB-GO (Royal Blue with bandpass filter) to image TurboGFP expression in mouse muscle.

Koganezawa, Y., Umetani, M., Sato, M., & Wakamoto, Y. (2022). History-dependent physiological adaptation to lethal genetic modification under antibiotic exposure. Elife, 11, e74486. doi: 10.7554/eLife.74486

• Used the Stereo Microscope Fluorescence Adapter SFA-GR on an Olympus SZ61 microscope to count colonies of mCherry-labeled cells.

Koganezawa, Y., Wakamoto, Y., Sato, M., & Umetani, M. (2023). Detecting Photoactivatable Cre-mediated Gene Deletion Efficiency in Escherichia coli. Bio-protocol, 13(11).

Korzen, L., A. Israel, and A. Abelson, 2011. Grazing effects of fish versus sea urchins on turf algae and coral recruits: Possible implications for coral reef resilience and restoration. Journal of Marine Sciences, Vol. 2011, Article ID 960207 doi:10.1155/2011/960207.

• Used the BlueStar flashlight to inspect experimental settlement surfaces for coral recruits.

Kubicek, K. M. (2022). Developmental osteology of Ictalurus punctatus and Noturus gyrinus (Siluriformes: Ictaluridae) with a discussion of siluriform bone homologies. Vertebrate Zoology, 72, 661-727. doi: 10.3897/vz.72.e85144  LINK

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) on a ZEISS SteREO Discovery.V20 stereomicroscope to observe fluorescence-stained neuromasts.

Kühl, M., L. Behrendt, E. Trampe, K. Qvortrup, U. Schreiber, S. M. Borisov, I. Klimant, and A. W. D. Larkum, 2012. Microenvironmental ecology of the chlorophyll b-containing symbiotic cyanobacterium Prochloron in the didemnid ascidian Lissoclinum patella. Frontiers in Microbiology, 3: 402.

Kumar, T., Blondel, L., & Extavour, C. G. (2020). Topology-driven protein-protein interaction network analysis detects genetic sub-networks regulating reproductive capacity. Elife, 9, e54082.

Kumar, V., Umair, Z., Lee, U., & Kim, J. (2023). Two Homeobox Transcription Factors, Goosecoid and Ventx1. 1, Oppositely Regulate Chordin Transcription in Xenopus Gastrula Embryos. Cells, 12(6), 874.

Kumar, V., Goutam, R. S., Umair, Z., Park, S., Lee, U., & Kim, J. (2021). Foxd4l1. 1 Negatively Regulates Chordin Transcription in Neuroectoderm of Xenopus Gastrula. Cells, 10(10), 2779. doi: 10.3390/cells10102779

Kumbargeri, Y., Planche, J. P., Adams, J. J., Rovani, J., & Elwardany, M. D. (2024). Comprehensive Selection of Base Asphalt Binders for Effective Formulation of Polymer-Modified Asphalts. Transportation Research Record, 03611981231217271.

Kuttykattil, A., Raju, S., Vanka, K. S., Bhagwat, G., Carbery, M., Vincent, S. G. T., … & Palanisami, T. (2022). Consuming microplastics? Investigation of commercial salts as a source of microplastics (MPs) in diet. Environmental Science and Pollution Research, 1-13. doi: 10.1007/s11356-022-22101-0  LINK

• Used the Stereo Microscope Fluorescence Adapter SFA-RB on a Leica Wild M3B to observe microplastic particles stained with Nile red on filter paper.

Lahiri, A. K., & Bevan, M. D. (2020). Dopaminergic Transmission Rapidly and Persistently Enhances Excitability of D1 Receptor-Expressing Striatal Projection Neurons. Neuron.

• Used the Dual Fluorescent Protein flashlight to verify viral reporter/opsin expression in mouse brain slices during sectioning.

Lai, C., Bush, P. J., Warunek, S., Covell Jr, D. A., & Al-Jewair, T. (2019). An in vitro comparison of ultraviolet versus white light in the detection of adhesive remnants during orthodontic debonding. Angle Orthodontist.

Lalchandani, R. R., and S. Vicini. (2013). Inhibitory collaterals in genetically identified medium spiny neurons in mouse primary corticostriatal cultures. Physiological Reports, published online 24 November 2013. doi: 10.1002/phy2.164

Lalchandani, R. R., M.-S. van der Goes, J. G. Partridge, and S. Vicini, 2013. Dopamine D2 receptors regulate collateral inhibition between striatal medium spiny neurons. Journal of Neuroscience, 33(35): 14075-14086. doi: 10.1523/jneurosci.0692-13.2013

LaMarca, E. A., Saito, A., Plaza-Jennings, A., Hellmich, A., Fernando, M. B., Javidfar, B., … & Akbarian, S. (2023). R-loop landscapes in the developing human brain are linked to neural differentiation and cell-type specific transcription. bioRxiv, 2023-07.

Lamb, J. Y., & Davis, M. P. (2020). Salamanders and other amphibians are aglow with biofluorescence. Scientific Reports, 10(1), 1-7.  Open access

• Used the Model DFP-1 Dual Fluorescent Protein flashlight and the Royal Blue and Ultraviolet light heads of the Model SFA Stereo Microscope Fluorescence Adapter to search for fluorescence, and as an excitation source for spectral emission measurements.

Langmüller, A. M., Champer, J., Lapinska, S., Xie, L., Metzloff, M., Liu, J., … & Messer, P. W. (2021). Fitness effects of CRISPR endonucleases in Drosophila melanogaster populations. bioRxiv.

Lapshin, G., Salih, A., Kolosov, P., Golovkina, M., Zavorotnyi, Y., Ivashina, T., … & Savitsky, A. (2015). Fluorescence color diversity of Great Barrier Reef corals. Journal of Innovative Optical Health Sciences, 8(4), 1550028. doi:10.1142/S1793545815500285  pdf

Laukaitis-Yousey, H. J., & Macaluso, K. R. (2024). Cat Flea Coinfection with Rickettsia felis and Rickettsia typhi. Vector-Borne and Zoonotic Diseases, 24(4).

Leeuw, T., S. O. Newburg, E. S. Boss, W. H. Slade, M. G. Soroka, J. Pederson, C. Chryssostomidis, and F. S. Hover, 2013. Remote identification of the invasive tunicate Didemnum vexillum using reflectance spectroscopy. Applied Optics, 52(8): 1758-1763.

Lemaire, L., Desroches, M., Krupa, M., Pizzamiglio, L., Scalmani, P., & Mantegazza, M. (2021). Modeling Na_V1. 1/SCN1A sodium channel mutations in a microcircuit with realistic ion concentration dynamics suggests differential GABAergic mechanisms leading to hyperexcitability in epilepsy and migraine. PLoS Computational Biology doi: 10.1371/ journal.pcbi.1009239

Leonard, C., Hédouin, L., Lacorne, M. C., Dalle, J., Lapinski, M., Blanc, P., & Nugues, M. M. (2022) Performance of innovative materials as recruitment substrates for coral restoration. Restoration Ecology, doi: 10.1111/rec.13625.

Leong, R. C., Marzinelli, E. M., Low, J., Bauman, A. G., Lim, E. W. X., Lim, C. Y., … & Guest, J. R. (2018). Effect of coral-algal interactions on early life history processes in Pocillopora acuta in a highly disturbed coral reef system. Frontiers in Marine Science, 5, 385.

Lesser, M. P., and C. D. Mobley, 2007. Bathymetry, water optical properties, and benthic classification of coral reefs using hyperspectral remote sensing imagery. Coral Reefs, 26(4): 819-829.

Letchuman, S., Tucker, A., Miranda, D., Adkins, R. L., Aceves, M., Dietz, V., … & Dulin, J. N. (2022). Transcription factor Hb9 is expressed in glial cell lineages in the developing mouse spinal cord. Eneuro.

Lettieri, L., K. L. Cheney, C. H. Mazel, D. Boothe, N. J. Marshall and J. T. Streelman, 2009. Cleaner gobies evolve advertising stripes of higher contrast. J. Exp. Biol. 212: 2194-2203.

Leutenegger, A., C. D’Angelo, M. V. Matz, A. Denzel, F. Oswald, A. Salih, G. U. Nienhaus, and J. Wiedenmann, 2007. It’s cheap to be colorful: Anthozoans show a slow turnover of GFP-like proteins. FEBS Journal, 274: 2496-2505.

Leutenegger, A., S. Kredel, S. Gundel, C. D’Angelo, A. Salih, and J. Wiedenmann, 2007. Analysis of fluorescent and non-fluorescent sea anemones from the Mediterranean Sea during a bleaching event. JEMBE, 353: 221-234.

Levy, A., El-Mochtar, C., Wang, C., Goodin, M., & Orbovic, V. (2018). A new toolset for protein expression and subcellular localization studies in citrus and its application to citrus tristeza virus proteins. Plant Methods, 14(1), 2.

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) mounted on a Leica Wild M3Z to select transgenic shoots carrying the gene for GFP-Talin fusion.

Li, H., Luo, X., Li, N., Liu, T., & Zhang, J. (2023). Insulin-like peptide 8 (Ilp8) regulates female fecundity in flies. Frontiers in Cell and Developmental Biology, 11.

Li, N., Nguyen, R., Thiele, C. J., & Ho, M. (2021). Preclinical testing of chimeric antigen receptor T cells in neuroblastoma mouse models. STAR protocols, 2(4), 100942. 10.1016/j.xpro.2021.100942

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) to identify eGFP-expressing neuroblastomas in mice.

Li, S., J. B. Ridenour, H. Kim, R. L. Hirsch, J. C. Rupe, and B. H. Bluhm, 2013. Agrobacterium tumefaciens-mediated transformation of the soybean pathogen Phomopsis longicolla. Journal of Microbiological Methods, 92(3): 244-245.

Li, X., and M. E. Wolf, 2011. Visualization of virus-infected brain regions using a GFP-illuminating flashlight enables accurate and rapid dissection for biochemical analysis. Journal of Neuroscience Methods, 201: 177–179.

Li, Z., C. Feng, H. Ji, N. Shi, X. Song, Q. Zhao, C. Long, D. Pan, and X. Yang, 2015. Expression analysis of green fluorescent protein in tissues and organs in α-1,3 galactosyltransferase knockout pigs. Hereditas (Beijing).

Liang, D., R. G. White, and P. M. Waterhouse, 2012. Gene silencing in Arabidopsis spreads from the root to the shoot, through a gating barrier, by template-dependent, nonvascular, cell-to-cell movement. Plant Physiology, 159(3): 984-1000.

Lim, A. R., Kong, Q., Singh, S. K., Guo, L., Yuan, L., & Ma, W. (2022). Sunflower WRINKLED1 Plays a Key Role in Transcriptional Regulation of Oil Biosynthesis. International Journal of Molecular Sciences, 23(6), 3054. doi: 10.3390/ijms23063054

Lin, C. C., & Potter, C. J. (2016). Editing transgenic DNA components by inducible gene replacement in Drosophila melanogaster. Genetics, 203(4), 1613-1628.

Lin, J., Wang, D., Chen, X., Köllner, T.G., Mazarei, M., Guo, H., Pantalone, V.R., Arelli, P., Stewart, C.N., Wang, N. and Chen, F., (2016). An (E, E)‐α‐farnesene synthase gene of soybean has a role in defense against nematodes and is involved in synthesizing insect‐induced volatiles. Plant Biotechnology Journal, 15(4), 510-519.

Liu, L., Montenegro-Alonso, A. P., & Bakkeren, G. (2024). Characterization of a Foxtail Mosaic Virus Vector for Rust Fungus Avirulence Gene Expression in Wheat. PhytoFrontiers, PHYTOFR-09.

Lin, Y. L., Smith, S. N., Kanso, E., Septer, A. N., & Rycroft, C. H. (2023). A subcellular biochemical model for T6SS dynamics reveals winning competitive strategies. PNAS nexus, 2(7), pgad195.

Liu, J., Champer, J., Liu, C., Chung, J., Reeves, R., Luthra, A., … & Messer, P. W. (2018). Maximum likelihood estimation of fitness components in experimental evolution. bioRxiv, 345660.

Liu J, Luo Y, Ge H, Han C, Zhang H, et al., 2013. Anti-bacterial activity of recombinant human β-Defensin-3 secreted in the milk of transgenic goats produced by somatic cell nuclear transfer. PLOS ONE 8(6): e65379. doi:10.1371/journal.pone.0065379.

Liu, J., Tjellström, H., McGlew, K., Shaw, V., Rice, A., Simpson, J., … & Ohlrogge, J., 2015. Field production, purification and analysis of high-oleic acetyl-triacylglycerols from transgenic Camelina sativa. Industrial Crops and Products, 65: 259-268. doi:10.1016/j.indcrop.2014.11.019 Open access

Livingston, S. J., Quilichini, T. D., Booth, J. K., Wong, D. C., Rensing, K. H., Laflamme‐Yonkman, J., … & Samuels, A. L. (2020). Cannabis glandular trichomes alter morphology and metabolite content during flower maturation. The Plant Journal, 101(1), 37-56. doi:10.1111/tpj.14516

• Used the Stereo Microscope Fluorescence Adapter SFA-UV (Ultraviolet) mounted on an Olympus SZX10 to aid microextraction of metabolites from trichomes.

Logan, R. W., Ozburn, A. R., Arey, R. N., Ketchesin, K. D., Winquist, A., Crain, A., … & McClung, C. A. (2020). Valproate reverses mania-like behaviors in mice via preferential targeting of HDAC2. Molecular Psychiatry, 1-19. doi: 10.1038/s41380-020-00958

• Used the BlueStar flashlight to verify presence of viral GFP in brain punches.

Loiseau, E., de Boiry, A. Q., Niedermair, F., Albrecht, G., Rühs, P. A., & Studart, A. R. (2016). Explosive Raspberries: Controlled Magnetically Triggered Bursting of Microcapsules. Advanced Functional Materials.

Lord, N. D., Carte, A. N., Abitua, P. B., & Schier, A. F. (2021). The pattern of nodal morphogen signaling is shaped by co-receptor expression. Elife, 10, e54894. doi: 10.7554/eLife.54894

Losada, J. M., & Holbrook, N. M. (2018). Phloem structure and development in Illicium parviflorum, a basal angiosperm shrub. bioRxiv, 326322.

Losada, J. M., & Holbrook, N. M. (2019). Scaling of phloem hydraulic resistance in stems and leaves of the understory angiosperm shrub Illicium parviflorum. American Journal of Botany, 106(2), 244-259.

Losi G., Lia A.M., Gomez-Gonzalo M., Zonta M., Carmignoto G. (2019) Optogenetic Interneuron Stimulation and Calcium Imaging in Astrocytes. In: Raffaello A., Vecellio Reane D. (eds) Calcium Signalling (pp. 173-182). Methods in Molecular Biology, vol 1925. Humana Press, New York, NY

Lu, P., L. Graham, Y. Wang, D. Wu, and M. Tuszynski, 2014. Promotion of survival and differentiation of neural stem cells with fibrin and growth factor cocktails after severe spinal cord injury. JoVE (Journal of Visualized Experiments) (85), e51418, doi:10.3791/51418.

Lu, Z. H., Lv, K., Zhang, J. S., Dai, C. G., Liu, B., Ma, X. Y., … & Wang, A. D. (2014). Establishment of a green fluorescent protein tracing murine model focused on the functions of host components in necrosis repair and the niche of subcutaneously implanted glioma. Oncology Reports, 31(2), 657-664.

Luarte, A., Henzi, R., Fernández, A., Gaete, D., Cisternas, P., Pizarro, M., … & Varas-Godoy, M. (2020). Astrocyte-derived small extracellular vesicles regulate dendritic complexity through miR-26a-5p activity. Cells, 9(4), 930.

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) to select rat brain tissue with GFP transgene expression from the electroporated left telencephalon.

Ludt, W. B., & Clardy, T. R. (2022). First detection of biofluorescence in a deep‐sea anglerfish. Journal of Fish Biology, 100(3), 843-846.

Ma, J., and V. M. Weake, 2014. Affinity-based isolation of tagged nuclei from Drosophila tissues for gene expression analysis. J. Vis. Exp., (89), e50641, doi: 10.3791/50641.

Madjidi, H., and S. Negahdaripour, 2006. On robustness and localization accuracy of optical flow computation for underwater color images. Computer Vision and Image Understanding, 104(1): 61–76.

Madsen, D. H., et al., 2013. M2-like macrophages are responsible for collagen degradation through a mannose receptor–mediated pathway. Journal of Cell Biology, 202(6): 951-966. doi: 10.1083/jcb.201301081

Magistrado, D., El-Dougdoug, N. K., & Short, S. M. (2023). Sugar restriction and blood ingestion shape divergent immune defense trajectories in the mosquito Aedes aegypti. Scientific Reports, 13(1), 12368.

Magrini, T., Kiebala, D., Grimm, D., Nelson, A., Schrettl, S., Bouville, F., … & Studart, A. R. (2021). Tough Bioinspired Composites That Self-Report Damage. ACS Applied Materials & Interfaces. doi: 10.1021/acsami.1c05964

Mahmoud, L. M., Kaur, P., Stanton, D., Grosser, J. W., & Dutt, M. (2022). A cationic lipid mediated CRISPR/Cas9 technique for the production of stable genome edited citrus plants. Plant Methods, 18(1), 1-14. doi: 10.1186/s13007-022-00870-6

Mainland, R. L., Lyons, T. A., Ruth, M. M., & Kramer, J. M. (2017). Optimal RNA isolation method and primer design to detect gene knockdown by qPCR when validating Drosophila transgenic RNAi lines. BMC Research Notes, 10(1), 647. doi: 10.1186/s13104-017-2959-0 Open Access

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) to sort third instar Drosophila larvae based on GFP expression.

Marchioretto, M. K., Horton, J. T., Berstler, C. A., Humphries, J. B., Koloditch, I. J., Voss, S. D., … & Jefferies, L. R. (2018). Chemical cross‐linking of a variety of green fluorescent proteins as Förster resonance energy transfer donors for Yukon orange fluorescent protein: A project‐based undergraduate laboratory experience. Biochemistry and Molecular Biology Education.

Marie, K. L., Sassano, A., Yang, H. H., Michalowski, A. M., Michael, H. T., Guo, T., … & Zaidi, M. R. (2020). Melanoblast transcriptome analysis reveals pathways promoting melanoma metastasis. Nature Communications, 11(1), 1-18.

Martinez, A. S., M. Byrne,  and R.A. Coleman, 2013. Unique tagging of small echinoderms: A case study using the cushion star Parvulastra exigua. Methods in Ecology and Evolution, 4(10): 993-1000. DOI: 10.1111/2041-210X.12099.

Martinez, S., and A. Abelson, 2013. Coral recruitment: the critical role of early post-settlement survival. ICES Journal of Marine Science, 70(7), 1294-1298.

Martynova, E., Bouchard, M., Musil, L., & Cvekl, A. (2018). Identification of novel Gata3 distal enhancers active in mouse embryonic lens. Developmental Dynamics. doi: 10.1002/dvdy.24677

Mathew, E., Domínguez-Robles, J., Stewart, S., Mancuso, E., O’Donnell, K., Larraneta, E., & Lamprou, D. A. (2019). Fused Deposition Modelling as an Effective Tool for Anti-Infective Dialysis Catheter Fabrication. ACS Biomaterials Science & Engineering.

• Used the Stereo Microscope Fluorescence Adapter SFAZ-RB (Royal Blue) mounted on a Leica EZ4 to evaluate the distribution of tetracycline included as an antibacterial agent in a 3D-printed polyurethane catheter.

Matsuoka, I., Hata, K., Katsuzaki, H., Nakayama, H., Zang, L., Ota, M., … & Shimada, Y. (2022). Zebrafish obesogenic test identifies anti‐adipogenic fraction in Moringa oreifera leaf extracts. Food Science & Nutrition. doi: 10.1002/fsn3.2758.

Matz, M. V., & Hunt, M. E. (2014). Isolation and characterization of novel green fluorescent proteins from copepods. U.S. Patent No. 8,772,454. Washington, DC: U.S. Patent and Trademark Office.

Matz, M. V., N. J. Marshall, and M. Vorobyev, 2006. Are corals colorful?. Photochemistry and Photobiology, 82:345-350.

Mazel, C. H. (2005). Underwater fluorescence photography in the presence of ambient light. Limnol. Oceanogr. Methods, 3:499-510.

Mazel, C. H. (2017). Method for determining the contribution of fluorescence to an optical signature, with implications for postulating a visual function. Frontiers in Marine Science, 4, 266.

Mazel, C.H. and Verbeek, E.R. (2014). Fluorescence of minerals under blue light.  The Picking Table (Journal of the Franklin-Ogdensburg Mineralogical Society), vol. 55, no. 2, p. 13-25.

McCaw, M. E., Lee, K., Kang, M., Zobrist, J. D., Azanu, M. K., Birchler, J. A., & Wang, K. (2021). Development of a transformable fast-flowering mini-maize as a tool for maize gene editing. Frontiers in Genome Editing, 27.

McGinn, M., Phippen, W. B., Chopra, R., Bansal, S., Jarvis, B. A., Phippen, M. E., … & Durrett, T. P. (2019). Molecular tools enabling pennycress (Thlaspi arvense) as a model plant and oilseed cash cover crop. Plant Biotechnology Journal, 17(4), 776-788. doi: 10.1111/pbi.13014

• Used the Model DFP-1 Dual Fluorescent Protein Flashlight to select RFP-positive seeds of field pennycress (Thlaspi arvense). More info in this article.

McGreal-Estrada, R. S., Wolf, L. V., & Cvekl, A. (2018). Promoter-enhancer looping and shadow enhancers of the mouse αA-crystallin locus. Biology Open, 7(12).

Mellado-Sánchez, M., McDiarmid, F., Cardoso, V., Kanyuka, K., & MacGregor, D. R. (2020). Virus-mediated transient expression techniques enable genetic modification of Alopecurus myosuroides. bioRxiv.

• Used the Model DFP-1 Dual Fluorescent Protein Flashlight to identify GFP-positive plants, and as an illumination source for photography.

Meron, D., Maor-Landaw, K., Eyal, G., Elifantz, H., Banin, E., Loya, Y., & Levy, O. (2020). The Complexity of the Holobiont in the Red Sea Coral Euphyllia paradivisa under Heat Stress. Microorganisms, 8(3), 372.

Metzloff, M., Yang, E., Dhole, S., Clark, A. G., Messer, P. W., & Champer, J. (2022). Experimental demonstration of tethered gene drive systems for confined population modification or suppression. BMC biology, 20(1), 1-13.

Meza, J. O., Kadam, P., Yoni, B., & Goossens, E. Cryopreserving testicular tissue is the preferred method to preserve SSCs prior to spermatogonial stem cell transplantation. Reproductive BioMedicine Online.

Miller, D., Reynolds, G. E., Mejia, R., Stark, J. M., & Murnane, J. P. (2011). Subtelomeric regions in mammalian cells are deficient in DNA double-strand break repair. DNA Repair, 10(5), 536-544.

Miller, I. B., Moeller, M., Kellermann, M. Y., Nietzer, S., Di Mauro, V., Kamyab, E., … & Schupp, P. J. (2022). Towards the Development of Standardized Bioassays for Corals: Acute Toxicity of the UV Filter Benzophenone-3 to Scleractinian Coral Larvae. Toxics, 10(5), 244. doi: 10.3390/toxics10050244

Miller, M. W., Latijnhouwers, K. R. W., Bickel, A., Mendoza‐Quiroz, S., Schick, M., Burton, K., & Banaszak, A. T. (2022). Settlement yields in large‐scale in situ culture of Caribbean coral larvae for restoration. Restoration Ecology, e13512. doi: 10.1111/rec.13512

Mineur, Y. S., S. R. Taylor, and M. R. Picciotto (2014). Calcineurin down-regulation in the amygdala is sufficient to induce anxiety-like and depression-like behaviors in C57BL/6J male mice. Biological Psychiatry,. doi: 10.1016/j.biopsych.2014.03.009.

Minton, D., Lundgren, I., & Pakenham, A. (2007). A two-year study of coral recruitment and sedimentation in Asan Bay, Guam. Final report prepared for the National Park Service, Guam.  LINK

Mo, D., Shen, J., & Zhang, J. (2022). Use of FLP/FRT System to Screen for Regulators in the Drosophila Wing. In Notch Signaling Research: Methods and Protocols (pp. 39-48). Humana, New York, NY.

Moeller, M., Nietzer, S., Schils, T., & Schupp, P. J. (2017) Low sediment loads affect survival of coral recruits: the first weeks are crucial. Coral Reefs, 36(1), 39-49. doi:10.1007/s00338-016-1513-1

Moeller, M., Nietzer, S., & Schupp, P. J. (2019). Neuroactive compounds induce larval settlement in the scleractinian coral Leptastrea purpurea. Scientific Reports, 9(1), 2291.

• Used the BlueStar flashlight to select coral Leptastrea purpurea larvae by their natural fluorescence.

Mohiuddin, M., Choi, J. J., Lee, N. H., Jeong, H. H., Anderson, S. E., Han, W. M., … & Aguilar, C. A. (2020). Transplantation of muscle stem cell mitochondria rejuvenates the bioenergetic function of dystrophic muscle. bioRxiv.

• Used the Stereo Microscope Fluorescence Adapter with Royal Blue and Green excitation to identify engrafted muscle fibers.

Moline, M. A., D. L. Woodruff, and N. R. Evans, 2007. Optical delineation of benthic habitat using an autonomous underwater vehicle. Journal of Field Robotics, 24(6): 461-471.

Montalbetti, E., Isa, V., Vencato, S., Louis, Y., Montano, S., Lavorano, S., … & Seveso, D. (2022). Short-term microplastic exposure triggers cellular damage through oxidative stress in the soft coral Coelogorgia palmosa. Marine Biology Research, 1-14. doi: 10.1080/17451000.2022.2137199

• Used the Stereo Microscope Fluorescence Adapter with Ultraviolet excitation on a Paralux stereo microscope to count microbeads on filter paper.

Motley, M. P., Madsen, D. H., Jürgensen, H. J., Spencer, D. E., Szabo, R., Holmbeck, K., … & Bugge, T. H. (2016). A CCR2 macrophage endocytic pathway mediates extravascular fibrin clearance in vivo. Blood, 127(9), 1085-1096.

Murez, Z. (2018). Fluorescence, Scattering and Refraction in Computer Vision, with a Taste of Deep Learning (Doctoral dissertation, UC San Diego).

Myllymäki, H., Niskanen, M., Oksanen, K., & Rämet, M. (2018). Immunization of Adult Zebrafish for the Preclinical Screening of DNA-based Vaccines. JoVE (Journal of Visualized Experiments), (140), e58453.

Naim, F., K. Nakasugi, R. N. Crowhurst, E. Hilario, A. B. Zwart, R. P. Hellens, J. M. Taylor, P. M. Waterhouse, and C. C. Wood, 2012. Advanced engineering of lipid metabolism in Nicotiana benthamiana using a draft genome and the V2 viral silencing-suppressor protein. PLoS one 7(12): e52717.

Nanasato, Y., Kido, M., Kato, A., Ueda, T., Suharsono, S., Widyastuti, U., … & Akashi, K. (2015). Efficient genetic transformation of Jatropha curcas L. by means of vacuum infiltration combined with filter-paper wicks. In Vitro Cellular & Developmental Biology – Plant, 1-8.

Nativ, H., Scucchia, F., Martinez, S., Einbinder, S., Chequer, A., Goodbody-Gringley, G., & Mass, T. (2021). In situ estimation of coral recruitment patterns from shallow to mesophotic reefs using an optimized fluorescence imaging system. Frontiers in Marine Science, 1047.

Newbury, A., Dawson, B., Klümper, U., Hesse, E., Castledine, M., Fontaine, C., … & Sanders, D. (2022). Fitness effects of plasmids shape the structure of bacteria–plasmid interaction networks. Proceedings of the National Academy of Sciences, 119(22), e2118361119. doi: 10.1073/pnas.2118361119

Nguyen, J., Ita, K. B., Morra, M. J., & Popova, I. E. (2016). The Influence of Solid Microneedles on the Transdermal Delivery of Selected Antiepileptic Drugs. Pharmaceutics, 8(4), 33.

Nie, Z., Luo, H., Li, J., Sun, H., Xiao, Y., Jia, R., … & Shen, Z. (2020). High-Throughput Screening of T7 Promoter Mutants for Soluble Expression of Cephalosporin C Acylase in E. coli. Applied Biochemistry and Biotechnology, 190(1), 293-304.

• Used the BlueStar flashlight to select GFP-expressing E. coli colonies on agar plates.

Nietzer, S., Moeller, M., Kitamura, M., & Schupp, P. J. (2018). Coral larvae every day: Leptastrea purpurea, a brooding species that could accelerate coral research. Frontiers in Marine Science, 5, 466.

Niwa, M., Lee, R. S., Tanaka, T., Okada, K., Kano, S. I., & Sawa, A. (2016). A critical period of vulnerability to adolescent stress: epigenetic mediators in mesocortical dopaminergic neurons. Human Molecular Genetics, ddw019.

Nyikó, T., Auber, A., & Bucher, E. (2019). Functional and molecular characterization of the conserved Arabidopsis PUMILIO protein, APUM9. Plant Molecular Biology, 1-16.

Oberländer, V., Xu, X., Ahlbeck, J., Bitzenhofer, S. H., Mulert, C., & Hanganu-Opatz, I. L. (2020). Resolving and Rescuing Developmental Miswiring in a Mouse Model of Cognitive Impairment. Neuron, 105, 1-15. doi: 10.1016/j.neuron.2019.09.042

Ochoa, M. C., Sanchez-Gregorio, S., de Andrea, C. E., Garasa, S., Alvarez, M., Olivera, I., … & Melero, I. (2023). Synergistic effects of combined immunotherapy strategies in a model of multifocal hepatocellular carcinoma. Cell Reports Medicine. doi: 10.1016/j.xcrm.2023.101009 Open access

Oh, T., Sermsripong, J., & Hicks, B. W. (2020). Using Scuba for In Situ Determination of Chlorophyll Distributions in Corals by Underwater Near Infrared Fluorescence Imaging. Journal of Marine Science and Engineering, 8(1), 53.

• Used the Sola NIGHTSEA light as part of the underwater imaging suite.

Onofre, J., Kadam, P., Baert, Y., & Goossens, E. (2020). Testicular tissue cryopreservation is the preferred method to preserve spermatogonial stem cells prior to transplantation. Reproductive BioMedicine Online, 40(2), 261-269.

Osabutey, A. F., Kim, A. Y., Seo, B. Y., Mai, L. X., & Koh, Y. H. (2021). Alteration of unfolded protein responses and autophagy signaling represented the molecular basis underlying saccharin toxicity to Drosophila (Diptera: Drosophilidae). Archives of Insect Biochemistry and Physiology, e21826.

Oswald, F., F. Schmitt, A. Leutenegger, S. Ivanchenko, C. D’Angelo, A. Salih, S. Maslakova, M. Bulina, R. Schirmbeck, G. U. Nienhaus, M. V. Matz, and J. Wiedenmann, 2007. Contributions of host and symbiont pigments to the coloration of reef corals. FEBS Journal 274: 1102-1109.

Padilla‐Gamiño, J. L., Roth, M. S., Rodrigues, L. J., Bradley, C. J., Bidigare, R. R., Gates, R. D., … & Spalding, H. L. (2019). Ecophysiology of mesophotic reef‐building corals in Hawai ‘i is influenced by symbiont–host associations, photoacclimatization, trophic plasticity, and adaptation. Limnology and Oceanography, 64(5), 1980-1995.

Palenik, C. S., Brinsko-Beckert, K., Insana, J., & Palenik, S. J. (2018). Analytical and Transfer Characteristics of a Fluorescent Detection Spray: Implications for subvisible and nanotrace particle transfers. Forensic Science International, 286, 96-105.. doi: 10.1016/j.forsciint.2018.03.007

Pardo-Peña, K., Lorea-Hernández, J. J., Camacho-Hernández, N. P., Ordaz, B., Villasana-Salazar, B., Morales-Villagrán, A., & Peña-Ortega, F. (2018). Hydrogen peroxide extracellular concentration in the ventrolateral medulla and its increase in response to hypoxia in vitro: Possible role of microglia. Brain research, 1692, 87-99.

Park, G. W., Heo, J., Kang, J. Y., Yang, J. W., Kim, J. S., Kwon, K. D., … & Lee, S. J. (2020). Topical cell-free conditioned media harvested from adipose tissue-derived stem cells promote recovery from corneal epithelial defects caused by chemical burns. Scientific Reports, 10(1), 1-15.

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) on a NexiusZoom stereo microscope to observe and photograph fluorescein-stained corneas to follow recovery from epithelial defect.

Park, J. Y., H. Kalluri, A. Mathur, V. Ramnath, M. Kim, J. Aitken, and G. Tuell, 2012. Blob-level active-passive data fusion for benthic classification. Proc. SPIE 8390, Algorithms and Technologies for Multispectral, Hyperspectral, and Ultraspectral Imagery XVIII.

Park, S. Y., Qiu, J., Wei, S., Peterson, F. C., Beltrán, J., Medina-Cucurella, A. V., … & Cutler, S. R. (2024). An orthogonalized PYR1-based CID module with reprogrammable ligand-binding specificity. Nature Chemical Biology, 20(1), 103-110.

Pathak, B., & Srivastava, V. (2020). Recombinase-mediated integration of a multigene cassette in rice leads to stable expression and inheritance of the stacked locus. bioRxiv.

• Used the Stereo Microscope Fluorescence Adapter SFA-RB-GO (Royal Blue with bandpass filter) on a Leica 56D stereo microscope to observe GFP expression in young tissue.

Payton, T. G., Beckingham, B. A., & Dustan, P. (2019). Microplastic exposure to zooplankton at tidal fronts in Charleston Harbor, SC USA. Estuarine, Coastal and Shelf Science, 232. doi: 10.1016/j.ecss.2019.106510106510.

• Used the Stereo Microscope Fluorescence Adapter SFAZ-RB (Royal Blue) on a Nikon SMZ1000 to aid in detecting microplastics.

Peria, J., & Pernet, B. (2019). Tolerance to salinity and thermal stress by larvae and adults of the serpulid annelid Ficopomatus enigmaticus. Invertebrate Biology. doi: 10.1111/ivb.12271.

• Used the Stereo Microscope Fluorescence Adapter SFAZ-CY (Cyan) on a Leica EZ4 microscope to observe calcein marks on worm tubes to measure growth.

Peter, C. J., Saito, A., Hasegawa, Y., Tanaka, Y., Nagpal, M., Perez, G., … & Dincer, A. (2019). In vivo epigenetic editing of Sema6a promoter reverses transcallosal dysconnectivity caused by C11orf46/Arl14ep risk gene. Nature Communications, 10(1), 1-14.

• Used the DFP-1 Dual Fluorescent Protein flashlight in conjunction with a stereo microscope to dissect mouse somatosensory cortex where GFP-positive neurons were localized.

Petersen, L. E., Kellermann, M. Y., Fiegel, L. J., Nietzer, S., Bickmeyer, U., Abele, D., & Schupp, P. J. (2023). Photodegradation of a bacterial pigment and resulting hydrogen peroxide release enable coral settlement. Scientific Reports, 13(1), 3562. Open access

Pieczynski, J. N., Deets, A., McDuffee, A., & Lynn Kee, H. (2019) An undergraduate laboratory experience using CRISPR‐Cas9 technology to deactivate green fluorescent protein expression in Escherichia coli. Biochemistry and Molecular Biology Education. doi: 10.1002/bmb.21206

• Students use the Stereo Microscope Fluorescence Adapter SFA-RB-GO (Royal Blue with green bandpass filter) on a Motic SMZ-171 microscope with MoticamX digital camera to capture detailed images of bacterial colonies.

Piniak, G. A., Fogarty, N. D., Addison, C. M., and Kenworthy, J. (2005). Fluorescence census techniques for coral recruits. Coral Reefs, 24:496-500.

Pizzano, M., Vereertbrugghen, A., Cernutto, A., Sabbione, F., Keitelman, I. A., Shiromizu, C. M., … & Galletti, J. G. (2024). TRPV1 channels facilitate axonal degeneration of corneal sensory nerves in dry eye. The American Journal of Pathology.

Plath, J. A., Entler, B. V., Kirkerud, N. H., Schlegel, U., Galizia, C. G., & Barron, A. B. (2017). Different roles for honey bee mushroom bodies and central complex in visual learning of colored lights in an aversive conditioning assay. Frontiers in Behavioral Neuroscience, 11.

Poding, L. H., Jägers, P., Senen, B., Limmon, G. V., Herlitze, S., & Huhn, M. (2023). New observations of fluorescent organisms in the Banda Sea and in the Red Sea. bioRxiv, 2023-09.

Pokrass, M. J., Ryan, K. A., Xin, T., Pielstick, B., Timp, W., Greco, V., & Regot, S. (2020). Cell-Cycle-Dependent ERK Signaling Dynamics Direct Fate Specification in the Mammalian Preimplantation Embryo. Developmental Cell. doi: 10.1016/j.devcel.2020.09.013.

Pollock, N., Staunton, C., Vasilaki, A., McArdle, A., & Jackson, M. J. (2017). Denervated muscle fibers induce mitochondrial peroxide generation in neighboring innervated fibers: Role in muscle aging. Free Radical Biology and Medicine. doi: 10.1016/j.freeradbiomed.2017.07.017 Open Access

Powers, S., Kwok, S., Lovejoy, E., Lavin, T., & Sher, R. B. (2017). Embryonic Exposure to the Environmental Neurotoxin BMAA Negatively Impacts Early Neuronal Development and Progression of Neurodegeneration in the Sod1-G93R Zebrafish Model of Amyotrophic Lateral Sclerosis. Toxicological Sciences, 157(1), 129-140. doi: 10.1093/toxsci/kfx020

Prabhu, S. A., Ndlovu, B., Engelbrecht, J., & Van den Berg, N. (2017). Generation of composite Persea americana (Mill.)(avocado) plants: A proof-of-concept-study. PloS one, 12(10), e0185896. doi:10.1371/journal.pone.0185896

Pradeep, M. R. (2023). An in vitro comparison of ultraviolet versus white light in the detection of adhesive remnants during orthodontic debonding.. Journal of Advanced Sciences, 2(1).

Prestigio, C., Ferrante, D., Marte, A., Romei, A., Lignani, G., Onofri, F., … & Baldelli, P. (2021). REST/NRSF drives homeostatic plasticity of inhibitory synapses in a target-dependent fashion. bioRxiv.

Prestigio, C., Ferrante, D., Valente, P., Casagrande, S., Albanesi, E., Yanagawa, Y., … & Baldelli, P. (2019). Spike-Related Electrophysiological Identification of Cultured Hippocampal Excitatory and Inhibitory Neurons. Molecular Neurobiology, 1-17. doi: 10.1007/s12035-019-1506-5

Price, A. E., Stutz, S. J., Hommel, J. D., Anastasio, N. C., & Cunningham, K. A. (2019). Anterior insula activity regulates the associated behaviors of high fat food binge intake and cue reactivity in male rats. Appetite, 133, 231-239.

Profaci, C. P., Foreman, K. L., Spieth, L., Coelho-Santos, V., Berghoff, S. A., Fontaine, J. T., … & Daneman, R. (2024). Activity-dependent regulation of vascular cholesterol metabolism acts as a negative feedback mechanism for neurovascular coupling. bioRxiv, 2024-02.

Prudkovsky, A. A., Ivanenko, V. N., Nikitin, M. A., Lukyanov, K. A., Belousova, A., Reimer, J. D., & Berumen, M. L. (2016). Green Fluorescence of Cytaeis Hydroids Living in Association with Nassarius Gastropods in the Red Sea. PLoS One, 11(2). doi:10.1371/journal.pone.0146861 Open Access

Qamar, A. Z., Asefifeyzabadi, N., Taki, M., Naphade, S., Ellerby, L., & Shamsi, M. H. (2020). Characterization and application of fluidic properties of trinucleotide repeat sequences by wax-on-plastic microfluidics. Journal of Materials Chemistry B, 8(4), 743-751.

• Used the Stereo Microscope Fluorescence Adapter with the Dino-Lite Edge microscope, with Royal Blue excitation and green bandpass filter to image capillary flow via FAM-labeled trinucleotide repeats.

Quick, C., D’Angelo, C., & Wiedenmann, J. (2018). Trade-offs associated with photoprotective green fluorescent protein expression as potential drivers of balancing selection for colour polymorphism in reef corals. Frontiers in Marine Science, 5, 11.

Randall, C. J., Giuliano, C., Stephenson, B., Whitman, T. N., Page, C. A., Treml, E. A., … & Negri, A. P. (2024). Larval precompetency and settlement behaviour in 25 Indo-Pacific coral species. Communications Biology, 7(1), 142.

Rathbun, L. I., Colicino, E. G., Manikas, J., O’Connell, J., Krishnan, N., Reilly, N. S., … & Santra, P. (2020). Cytokinetic bridge triggers de novo lumen formation in vivo. Nature Communications, 11(1), 1-12.

• Used the Stereo Microscope Fluorescence Adapter light source for optogenetic activation.

Redolfi, N., Greotti, E., Zanetti, G., Hochepied, T., Fasolato, C., Pendin, D., & Pozzan, T. (2021). A New Transgenic Mouse Line for Imaging Mitochondrial Calcium Signals. Function, 2(3), zqab012.

Reed, F. A., & de Couet, H. G. (2021) Oncofly: A CURE for Cancer. bioRxiv, doi: 10.1101/2021.01.07.425757

• Used the Stereo Microscope Fluorescence Adapter with Royal Blue excitation (SFA-RB) to visualize GFP-expressing cells in Drosophila as part of a Course-Based Undergraduate Experience.

Regan, K., LeBourdais, R., Banerji, R., Zhang, S., Muhvich, J., Zheng, S., & Nia, H. T. (2024). Multiscale elasticity mapping of biological samples in 3D at optical resolution. Acta Biomaterialia, 176, 250-266.

Richevaux, L., Schenberg, L., Beraneck, M., & Fricker, D. (2018). Optogenetic stimulation of long-range inputs and functional characterization of connectivity in patch-clamp recordings in mouse brain slices. bioRxiv, 491563.

Riegl, B., Glynn, P. W., Banks, S., Keith, I., Rivera, F., Vera-Zambrano, M., … & Wiedenmann, J. (2018). Heat attenuation and nutrient delivery by localized upwelling avoided coral bleaching mortality in northern Galapagos during 2015/2016 ENSO. Coral Reefs, 1-13.

• Used the BlueStar flashlight to document the presence and distribution of coral endosymbionts and GFP-like proteins in host tissues based on their red and green fluorescence, respectively.

Riesenberg, A. N., Conley, K. W., Le, T. T., & Brown, N. L. (2017) Separate and coincident expression of Hes1 and Hes5 in the developing mouse eye. Developmental Dynamics. doi:10.1002/dvdy.24542.

Ritchie, M. W., Cheslock, A., Bourdages, M. P., Hamilton, B. M., Provencher, J. F., Allison, J. E., & MacMillan, H. A. (2023). Quantifying microplastic ingestion, degradation and excretion in insects using fluorescent plastics. Conservation Physiology, 11(1), coad052.

Ritchie, M. W., Provencher, J., Allison, J. E., Muzzatti, M. J., & MacMillan, H. A. (2023). The digestive system of a cricket pulverizes polyethylene microplastics down to the nanoplastic scale. Environmental Pollution, 2023-05.

Rivard, E. L., Ludwig, A. G., Patel, P. H., Grandchamp, A., Arnold, S. E., Berger, A., … & Findlay, G. D. (2021). A putative de novo evolved gene required for spermatid chromatin condensation in Drosophila melanogaster. bioRxiv.

di Robilant, V. N., Scardigli, R., Strimpakos, G., Tirone, F., Middei, S., Scopa, C., … & Vecchioli, S. F. (2019). Running-Activated Neural Stem Cells Enhance Subventricular Neurogenesis and Improve Olfactory Behavior in p21 Knockout Mice. Molecular Neurobiology, 1-23.

Roth, M. S., and N. Knowlton, 2009. Distribution, abundance, and microhabitat characterization of small juvenile corals at Palmyra Atoll. Mar. Ecol. Prog. Ser., 376:133-142.

Roth, M. S., T.-Y. Fan, and D. D. Deheyn, 2013. Life history changes in coral fluorescence and the effects of light intensity on larval physiology and settlement in Seriatopora hystrix. PLOS ONE 8(3): e59476. doi:10.1371/journal.pone.0059476.

Roth, M. S., Padilla-Gamiño, J. L., Pochon, X., Bidigare, R. R., Gates, R. D., Smith, C. M., & Spalding, H. L., 2015. Fluorescent proteins in dominant mesophotic reef-building corals. Mar Ecol Prog Ser, 521, 63-79. doi:10.3354/meps11108 free access pdf

Rouhana, L., Chong, T., & Newmark, P. A. (2022). Analysis of Morphogenesis and Flagellar Assembly During Spermatogenesis in Planarian Flatworms. pp. 199-216 in: Gavin R.H. (eds) Cytoskeleton. Methods in Molecular Biology, vol 2364. Humana, New York, NY. doi: 10.1007/978-1-0716-1661-1_10

Rousou, C., van Kronenburg, N., Sonnen, A. F., van Dijk, M., Moonen, C., Storm, G., … & Deckers, R. (2023). Microbubble-Assisted Ultrasound for Drug Delivery to the Retina in an Ex Vivo Eye Model. Pharmaceutics, 15(4), 1220.

Royero, P., Quatraccioni, A., Früngel, R., Silva, M. H., Bast, A., Ulas, T., … & Beck, H. (2022). Circuit-selective cell-autonomous regulation of inhibition in pyramidal neurons by Ste20-like kinase. Cell Reports, 41(10), 111757.

Rubio, F. J., Olivares, D. E., Dunn, C., Zhang, S., Hilaire, E. M., Henry, A., … & Hope, B. T. (2023). Flow cytometry of synaptoneurosomes (FCS) reveals increased ribosomal S6 and calcineurin proteins in activated medial prefrontal cortex to nucleus accumbens synapses. Journal of Neuroscience.

Salih, A., G. Cox, R. Szymczak, S. L. Coles, A. H. Baird, A. Dunstan, G. Cocco, J. Mills, and A. Larkum, 2006. The role of host-based color and fluorescent pigments in photoprotection and in reducing bleaching stress in corals. Proc. 10 ICRS, Okinawa.

Salih, A., 2012. Screening reef corals for novel GFP-type fluorescent proteins by confocal imaging. Methods in Molecular Biology, 872: 217-233.

Salinas-de-León, P., A. Costales-Carrera, S. Zeljkovic, D. J. Smith, and J. J. Bell, 2011. Scleractinian settlement patterns to natural cleared reef substrata and artificial settlement panels on an Indonesian coral reef. Estuarine, Coastal and Shelf Science, 93: 80-85.

Salinas-de-León, P., C. Dryden, D. J. Smith, and J. J. Bell, 2013. Temporal and spatial variability in coral recruitment on two Indonesian coral reefs: consistently lower recruitment to a degraded reef. Marine Biology, 160(1): 97-105.

Sande-Melon, M., Bergemann, D., Gonzalez-Rosa, J. M., & Cox, A. G. (2023). Development of a hepatic cryoinjury model to study liver regeneration. bioRxiv, 2023-07.

Santiago‐Valentín, J. D., Rodríguez‐Troncoso, A. P., Bautista‐Guerrero, E., López‐Pérez, A., & Cupul‐Magaña, A. L. (2019). Successful sexual reproduction of the scleractinian coral Porites panamensis: Evidence of planktonic larvae and recruitment. Invertebrate Biology. doi: 10.1111/ivb.12235

Santiago-Valentín, J. D., Rodríguez-Troncoso, A. P., Bautista-Guerrero, E., López-Pérez, A., & Cupul-Magaña, A. L. (2019). Settlement ecology of scleractinian corals of the Northeastern Tropical Pacific. Coral Reefs, 1-14.

• Used the FL-1 dive light and filter visor to detect coral recruits in situ on settlement tiles and natural surfaces.

Santos, P. M., Quintella, B. R., Jacinto, D., Gomes, A., Saldanha, C., Lourenço, S., … & Costa, J. L. (2022). Physical and chemical tagging methods for the sea urchin Paracentrotus lividus (Echinodermata: Echinoidea). Scientia Marina, 86(3), e038-e038. doi: 10.3989/scimar.05259.038

Savarese, A., & Lasek, A. W. (2018). Regulation of anxiety-like behavior and Crhr1 expression in the basolateral amygdala by LMO3. Psychoneuroendocrinology, 92: 13-20. doi: 10.1016/j.psyneuen.2018.03.016

Savolainen H, Volpe A, Phinikaridou A, Douek M, Fruhwirth G, de Rosales RTM. (2019). 68Ga-Sienna+ for PET-MRI Guided Sentinel Lymph Node Biopsy: Synthesis and Preclinical Evaluation in a Metastatic Breast Cancer Model. Nanotheranostics, 3(3):255-265. doi:10.7150/ntno.34727.

Schmid, M. R., I. Anderl, L. Vesala, L. M. Vanha-aho, X. J. Deng, M. Rämet, and D. Hultmark, 2014. Control of Drosophila blood cell activation via toll signaling in the fat body. PLOS ONE, 9(8), e102568. doi:10.1371/journal.pone.0102568

Schmidt, S. L., Dorsett, C. R., Iyengar, A. K., & Fröhlich, F. (2016). Interaction of Intrinsic and Synaptic Currents Mediate Network Resonance Driven by Layer V Pyramidal Cells. Cerebral Cortex.

Schmidt-Roach, S., A. Kunzmann and P. Martinez Abrizu, 2008. In situ observation of coral recruitment using fluorescence census techniques. JEMBE, 367:37-40.

Schneider, H. M., Lor, V. S., Zhang, X., Saengwilai, P., Hanlon, M. T., Klein, S. P., … & Lynch, J. P. (2023). Transcription factor bHLH121 regulates root cortical aerenchyma formation in maize. Proceedings of the National Academy of Sciences, 120(12), e2219668120.

Scott, D. A., I. Tabarean, Y. Tang, A. Cartier, E. Masliah, and S. Roy, 2010. A pathologic cascade leading to synaptic dysfunction in α-synuclein-induced neurodegeneration. Journal of Neuroscience, 30(24): 8083-8095.

Scucchia, F., Nativ, H., Neder, M., Goodbody-Gringley, G., & Mass, T. (2020). Physiological Characteristics of Stylophora pistillata Larvae Across a Depth Gradient. Frontiers in Marine Science, 7, 13.

Selph, K. E., Swalethorp, R., R Stukel, M., B Kelly, T., N Knapp, A., Fleming, K., … & R Landry, M. (2021). Phytoplankton community composition and biomass in the oligotrophic Gulf of Mexico. Journal of Plankton Research.

Shade, D. A. (2018). Morphological observations of fluorescence in different tick species (Family: Ixodidae). Acarologia, 58(4), 989-994. doi:10.24349/acarologia/20184305

Shao, L. R., Gao, F., Chinnasamy, V., Kazuki, Y., Oshimura, M., Reeves, R. H., & Stafstrom, C. E. (2023). Increased propensity for infantile spasms and altered neocortical excitation-inhibition balance in a mouse model of down syndrome carrying human chromosome 21. Neurobiology of Disease, 106198.

Sharp, K. G., Yee, K. M., & Steward, O. (2014). A re-assessment of long distance growth and connectivity of neural stem cells after severe spinal cord injury. Experimental Neurology, 257: 186-204. DOI: 10.1016/j.expneurol.2014.04.008

Shen, W. X., Au, P. C. K., Shi, B. J., Smith, N. A., Dennis, E. S., Guo, H. S., … & Wang, M. B. (2015). Satellite RNAs interfere with the function of viral RNA silencing suppressors. Frontiers in Plant Science, 6, 281. doi:10.3389/fpls.2015.00281

Shen, Y., Zhang, Q., Zhang, J., Lu, Z., Wang, A., Fei, X., … & Huang, Q. (2015). Advantages of a dual-color fluorescence-tracing glioma orthotopic implantation model: Detecting tumor location, angiogenesis, cellular fusion and the tumor microenvironment. Experimental and Therapeutic Medicine. Open access

Shockey, J., Mason, C., Gilbert, M., Cao, H., Li, X., Cahoon, E., & Dyer, J. (2015). Development and analysis of a highly flexible multi-gene expression system for metabolic engineering in Arabidopsis seeds and other plant tissues. Plant Molecular Biology, 1-14.

Shvedov, N. R., Analoui, S., Dafalias, T., Bedell, B. L., Gardner, T. J., & Scott, B. B. (2024). In vivo imaging in transgenic songbirds reveals superdiffusive neuron migration in the adult brain. Cell Reports, 43(2).

• Used the Xite-RB flashlight to screen for GFP expression in juvenile and adult songbirds.

Simonnet, J., Richevaux, L., Fricker, D. (2021) Single or Double Patch-Clamp Recordings In Ex Vivo Slice Preparation: Functional Connectivity, Synapse Dynamics, and Optogenetics. In: Dallas M., Bell D. (eds) Patch Clamp Electrophysiology. Methods in Molecular Biology, vol 2188. Humana, New York, NY. doi: 10.1007/978-1-0716-0818-0_15

• Used the Dual Fluorescent Protein flashlight to select GFP-expressing brain slices.

Singh, V., Chakraborty, S., & Chaudhuri, P. (2021). Quantification and polymer characterization of sediment microplastics along the Golden beach, Puri, India. Indian Journal of Geo Marine Sciences 50(7),  574-584.

Smith, E. G., D’Angelo, C., Sharon, Y., Tchernov, D., & Wiedenmann, J. (2017). Acclimatization of symbiotic corals to mesophotic light environments through wavelength transformation by fluorescent protein pigments. Proceedings of the Royal Society B, 284(1858): 20170320.

Smith, S., Salvato, F., Garikipati, A., Kleiner, M., & Septer, A. N. (2021). Activation of the type VI secretion system in the squid symbiont Vibrio fischeri requires the transcriptional regulator TasR and the structural proteins TssM and TssA. Journal of Bacteriology, JB-00399.

Smith, W. L., Buck, C. A., Ornay, G. S., Davis, M. P., Martin, R. P., Gibson, S. Z., & Girard, M. G. (2018). Improving Vertebrate Skeleton Images: Fluorescence and the Non-Permanent Mounting of Cleared-and-Stained Specimens. Copeia, 106(3), 427-435.

Smith, W. L., Everman, E., & Richardson, C. (2018). Phylogeny and Taxonomy of Flatheads, Scorpionfishes, Sea Robins, and Stonefishes (Percomorpha: Scorpaeniformes) and the Evolution of the Lachrymal Saber. Copeia, 106(1), 94-119. doi:10.1643/CG-17-669

Somerville, J., Zhou, L., & Raymond, B. (2019). Aseptic Rearing and Infection with Gut Bacteria Improve the Fitness of Transgenic Diamondback Moth, Plutella xylostella. Insects, 10(4), 89. doi:10.3390/insects10040089

• Used the Stereo Microscope Fluorescence Adapter SFA-GR (Green) to screen for DsRed expression in pupae.

Song, L., Xu, X., Putthoff, P., Fleck, D., Spehr, M., & Hanganu-Opatz, I. L. (2021). Sparser and Less Efficient Hippocampal-Prefrontal Projections account for Developmental Network Dysfunction in a Model of Psychiatric Risk Mediated by Gene-Environment Interaction. Journal of Neuroscience. doi: 10.1523/JNEUROSCI.1203-21.2021

Soto, D., De Palmas, S., Ho, M. J., Denis, V., & Allen Chen, C. (2021). A molecular census of early‐life stage scleractinian corals in shallow and mesophotic zones. Ecology and evolution. doi: 10.1002/ece3.8122

Søvik, E., Plath, J. A., Devaud, J. M., & Barron, A. B. (2016). Neuropharmacological Manipulation of Restrained and Free-flying Honey Bees, Apis mellifera. JoVE (Journal of Visualized Experiments), (117), e54695-e54695.

Speare, L., Cecere, A. G., Guckes, K. R., Smith, S., Wollenberg, M. S., Mandel, M. J., … & Septer, A. N. (2018). Bacterial symbionts use a type VI secretion system to eliminate competitors in their natural host. Proceedings of the National Academy of Sciences, 201808302.

Speltz, E. B., and L. Regan, 2013. White and green screening with circular polymerase extension cloning for easy and reliable cloning. Protein Science, 22(6): 859-864.

Speltz, E. B., Sawyer, N., & Regan, L. (2016). Combining Design and Selection to Create Novel Protein–Peptide Interactions. Methods in Enzymology.

Spires, J. E., North, E. W., Westby, S. R., Steppe, C. N., Dumhart, J. M., & Hildebrandt, S. S. (2023). Direct Setting of Eastern Oyster (Crassostrea virginica) Larvae Confirmed with Calcein, a Fluorochrome Dye. Estuaries and Coasts, 1-17.

Spires, J. E., & North, E. W. (2022). Marking the shells of juvenile and adult eastern oysters, Crassostrea virginica, with the fluorochrome dye calcein and measuring growth and mortality after marking. Journal of Molluscan Studies, 88(1). doi: 10.1093/mollus/eyac004

Srivastava, V., and Zhao, S. (2017). Tissue Culture and Transformation Response of Rice Cultivars Developed in Arkansas Breeding Program. B. R. Wells Arkansas Rice Research Studies 2016. 100-105. link

Stackhouse, T., Boggess, S., Hadziabdic, D., Trigiano, R. N., Ginzel, M., & Klingeman, W. (2021). Conventional Gel Electrophoresis and TaqMan Probes Enable Rapid Confirmation of Thousand Cankers Disease from Diagnostic Samples. Plant Disease. doi: 10.1094/PDIS-10-20-2258-RE

• Used the Royal Blue wavelength of the Dual Fluorescent Protein Flashlight to detect TaqMan probe fluorescence.

Steward, O., Coulibaly, A. P., Metcalfe, M., Dam, J. M., & Yee, K. M. (2021). AAV Vectors Acccumulate in the Pineal Gland after Injections into the Brain or Spinal Cord. Molecular Therapy-Methods & Clinical Development. doi: /10.1016/j.omtm.2021.09.016

Steward, O., Sharp, K. G., Yee, K. M., Hatch, M. N., & Bonner, J. F. (2014). Characterization of Ectopic Colonies That Form in Widespread Areas of the Nervous System with Neural Stem Cell Transplants into the Site of a Severe Spinal Cord Injury. The Journal of Neuroscience, 34(42), 14013-14021. doi: 10.1523/JNEUROSCI.3066-14.2014

Steyaert, M., Mogg, A., Dunn, N., Dowell, R., & Head, C. E. (2022). Observations of coral and cryptobenthic sponge fluorescence and recruitment on autonomous reef monitoring structures (ARMS). Coral Reefs, 41(4), 877-883. doi: 10.1007/s00338-022-02283-2

Stoppel, L. J., Kazdoba, T. M., Schaffler, M. D., Preza, A. R., Heynen, A., Crawley, J. N., & Bear, M. F. (2018). R-baclofen reverses cognitive deficits and improves social interactions in two lines of 16p11. 2 deletion mice. Neuropsychopharmacology, 43(3), 513. doi: 10.1038/npp.2017.236 Open Access

Sun, Y. K., Gutmann, B., & Small, I. (2019). Non-canonical Features of Pentatricopeptide Repeat Protein-Facilitated RNA Editing in Arabidopsis Chloroplasts. bioRxiv, 544486. doi: 10.1101/544486

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) to select GFP-positive Arabidopsis seeds.

Sünderhauf, D., Klümper, U., Gaze, W. H., Westra, E. R., & van Houte, S. (2023). Interspecific competition can drive plasmid loss from a focal species in a microbial community. The ISME Journal, 1-9.

Suter, T. A., Blagburn, S. V., Fisher, S. E., Anderson-Keightly, H. M., D’Elia, K. P., & Jaworski, A. (2020). TAG-1 Multifunctionality Coordinates Neuronal Migration, Axon Guidance, and Fasciculation. Cell Reports, 30(4), 1164-1177.

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) to identify HB9::GFP+ E11.5 mouse embryos and to aid in dissection of the ventral third of the spinal cord.

Swinford-Jackson, S. E., Fant, B., Wimmer, M. E., Chan, D., Knouse, M. C., Sarmiento, M., … & Pierce, R. C. (2022). Cocaine-induced changes in sperm Cdkn1a methylation are associated with cocaine resistance in male offspring. Journal of Neuroscience. doi: 10.1523/JNEUROSCI.3172-20.2022

Swinford-Jackson, S. E., Huffman, P. J., Knouse, M. C., Thomas, A. S., Rich, M. T., Mankame, S., … & Pierce, R. C. (2023). High frequency DBS-like optogenetic stimulation of nucleus accumbens dopamine D2 receptor-containing neurons attenuates cocaine reinstatement in male rats. Neuropsychopharmacology, 48(3), 459-467.

Swinford-Jackson, S. E., Rich, M. T., Huffman, P. J., Knouse, M. C., Thomas, A. S., Mankame, S., … & Pierce, R. C. (2023). Low frequency deep brain stimulation of nucleus accumbens shell neuronal subpopulations attenuates cocaine seeking selectively in male rats. Addiction neuroscience, 9, 100133.

Szczurkowska, J., Cwetsch, A. W., Dal Maschio, M., Ghezzi, D., Ratto, G. M., & Cancedda, L. (2016). Targeted in vivo genetic manipulation of the mouse or rat brain by in utero electroporation with a triple-electrode probe. Nature Protocols, 11(3), 399-412.

Taboada, C., Brunetti, A. E., Pedron, F. N., Neto, F. C., Estrin, D. A., Bari, S. E., … & Faivovich, J. (2017). Naturally occurring fluorescence in frogs. Proceedings of the National Academy of Sciences, 201701053.

Tan, V. W., Salmi, T. M., Karamalakis, A. P., Gillespie, A., Ong, A. J. S., Balic, J. J., … & Cox, A. G. (2024). SLAM-ITseq identifies that Nrf2 induces liver regeneration through the pentose phosphate pathway. Developmental Cell.

Tang, Y., Gervais, C., Moffitt, R., Nareddula, S., Zimmermann, M., Nadew, Y. Y., … & Chubykin, A. A. (2023). Visual experience induces 4–8 Hz synchrony between V1 and higher-order visual areas. Cell Reports, 42(12).

Teng, L., Wang, K., Xu, J., & Xu, C. (2015). Flavin mononucleotide (FMN)-based fluorescent protein (FbFP) as reporter for promoter screening in Clostridium cellulolyticum. Journal of Microbiological Methods. doi:10.1016/j.mimet.2015.09.018

TerMarsch, H., & Ward, J. (2020). Body-generated hydrodynamic flows influence male–male contests and female mate choice in a freshwater fish. Animal Behaviour, 169, 119-128.

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) on an Amscope stereo microscope to verify ablation of lateral line neuromasts via DASPEI staining.

Thorn, R. J., Clift, D. E., Ojo, O., Colwill, R. M., & Creton, R. (2017). The loss and recovery of vertebrate vision examined in microplates. PloS one, 12(8). doi: 10.1371/journal.pone.0183414

Tkatch, T., Greotti, E., Baranauskas, G., Pendin, D., Roy, S., Nita, L. I., … & Fishman, D. (2017). Optogenetic control of mitochondrial metabolism and Ca2+ signaling by mitochondria-targeted opsins. Proceedings of the National Academy of Sciences, 201703623.

Toinga-Villafuerte, S., Janga, M. R., Isabel Vales, M., & Rathore, K. S. (2022). Green fluorescent protein gene as a tool to examine the efficacy of Agrobacterium-delivered CRISPR/Cas9 reagents to generate targeted mutations in the potato genome. Plant Cell, Tissue and Organ Culture (PCTOC), 1-12. doi: 10.1007/s11240-022-02310-8

Toivola, R., Jang, S. H., Mannikko, D., Stoll, S., Jen, A. K., & Flinn, B. D. (2018). Photochemical changes in absorption and fluorescence of DDM-containing epoxies. Polymer, 142, 11-22. doi: 10.1016/j.polymer.2018.03.015

Tong, L., Hill, R. A., Damisah, E. C., Murray, K. N., Yuan, P., Bordey, A., & Grutzendler, J. (2021). Imaging and optogenetic modulation of vascular mural cells in the live brain. Nature Protocols, 16(1), 472-496. doi: 10.1038/s41596-020-00425-w

Torres-Zelada, E. F., George, S., Blum, H. R., & Weake, V. M. (2022). Chiffon triggers global histone H3 acetylation and expression of developmental genes in Drosophila embryos. Journal of Cell Science, 135(2). doi: 10.1242/jcs.259132

Treibitz, T., B. P. Neal, D. I. Kline, O. Beijbom, P. Roberts, B. G. Mitchell, and D. Kriegman, 2015. Wide field-of-view daytime fluorescence imaging of coral reefs. Scientific Reports 5, Article number: 7694 doi:10.1038/srep07694. Open access

Treibitz, T., Z. Murez, B. G. Mitchell, and D. Kriegman, 2012. Shape from fluorescence. Proceedings ECCV 2012, A. Fitzgibbon et al. (Eds.), Part VII, LNCS 7578: 292-306.

Truitt, J. M., Blednov, Y. A., Benavidez, J. M., Black, M., Ponomareva, O., Law, J., … & Harris, R. A. (2016). Inhibition of IKKβ Reduces Ethanol Consumption in C57BL/6J Mice. eneuro, 3(5), ENEURO-0256.

Ueberbach, T., Simacek, C. A., Tegeder, I., Kirischuk, S., & Mittmann, T. (2023). Tonic activation of GABAB receptors via GAT-3 mediated GABA release reduces network activity in the developing somatosensory cortex in GAD67-GFP mice. Frontiers in Synaptic Neuroscience, 15, 1198159. LINK

Vaccani, A. C., Freret-Meurer, N. V., Bertoncini, Á. A., & Santos, L. N. (2019). Shining in the dark: First record of biofluorescence in the seahorse Hippocampus reidi. PloS one, 14(8), e0220561. link to article

• Used the BlueStar flashlight to identify and photograph seahorse fluorescence.

Valanne, S., Salminen, T. S., Järvelä-Stölting, M., Vesala, L., & Rämet, M. (2019). Immune-inducible non-coding RNA molecule lincRNA-IBIN connects immunity and metabolism in Drosophila melanogaster. PLOS Pathogens, 15(1), e1007504. doi:10.1371/journal.ppat.1007504

Van Koningsveld, M., Ter Hofstede, R., Elzinga, J., Smolders, T., Schutter, M., and Osinga, R. (2017). ReefGuard: A Scientific Approach to Active Reef Rehabilitation. Terra et Aqua, 147: 5-16. link to pdf

Vanegas, K. G., Rendsvig, J. K. H., Jarczynska, Z. D., Cortes, M. V. D. C. B., van Esch, A. P., Morera-Gómez, M., … & Mortensen, U. H. (2023). A Mad7 System for Genetic Engineering of Filamentous Fungi. Journal of Fungi, 9(1), 16.

Vanegas, K. G., Jarczynska, Z. D., Strucko, T., & Mortensen, U. H. (2019). Cpf1 enables fast and efficient genome editing in Aspergilli. Fungal Biology and Biotechnology, 6(1), 6.

Vencato, S., Isa, V., Seveso, D., Saliu, F., Galli, P., Lavorano, S., & Montano, S. (2021). Soft corals and microplastics interaction: first evidence in the alcyonacean species Coelogorgia palmosa. Aquatic Biology, 30, 133-139. doi: 10.3354/ab00747

Vereertbrugghen, A., Pizzano, M., Sabbione, F., Keitelman, I. A., Shiromizu, C. M., Aguilar, D. V., … & Galletti, J. G. (2023). An ocular Th1 immune response promotes corneal nerve damage independently of the development of corneal epitheliopathy. Journal of Neuroinflammation, 20(1), 1-23.

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) to collect video of fluorescein distribution in mouse eyes.

Vermeij, M. J. A., M. L. Dailer, and C. M. Smith, 2011. Crustose coralline algae can suppress macroalgal growth and recruitment on Hawaiian coral reefs. Marine Ecology Progress Series, 422: 1-7.

Victor, B. C., Frable, B. W., & Ludt, W. B. (2024). Halichoeres sanchezi n. sp., a new wrasse from the Revillagigedo Archipelago of Mexico, tropical eastern Pacific Ocean (Teleostei: Labridae). PeerJ, 12, e16828.

Villa, S. M., Chen, J. Z., Kwong, Z., Acosta, A., Vega, N. M., & Gerardo, N. M. (2023). Specialized acquisition behaviors maintain reliable environmental transmission in an insect-microbial mutualism. Current Biology, 33, 1–9. open access

Vogt, A., C. D’Angelo, F. Oswald, A. Denzel, C. H. Mazel, M. V. Matz, S. Ivanchenko, G. U. Nienhaus, and J. Wiedenmann, 2008. A green fluorescent protein with photoswitchable emission from the deep sea. PLoS ONE, 3.

Volpe, A., Man, F., Lim, L., Khoshnevisan, A., Blower, J., Blower, P. J., & Fruhwirth, G. O. (2018). Radionuclide-fluorescence reporter gene imaging to track tumor progression in rodent tumor models. JoVE (Journal of Visualized Experiments), (133). doi: 10.3791/57088

Voss, K. J., C. D. Mobley, L. K. Sundman, J. E. Ivey, and C. H. Mazel, 2003. The spectral upwelling radiance distribution in optically shallow waters. Limnology and Oceanography, 48: 364-373.

Wails, C. N., Gruber, E. D., Slattery, E., Smith, L., & Major, H. L. (2017). Glowing in the light: fluorescence of bill plates in the Crested Auklet (Aethia cristatella). The Wilson Journal of Ornithology, 129(1), 155-158.

Wang, D., Y. Chen, S. Y. Leigh, H. Haeberle, C. H. Contag, and J. T. C. Liu, 2012. Microscopic delineation of medulloblastoma margins in a transgenic mouse model using a topically applied VEGFR-1 probe. Translational Oncology, 5(6): 408–414.

Wang, M., Rücklin, M., Poelmann, R. E., de Mooij, C. L., Fokkema, M., Lamers, G. E., … & Richardson, M. K. (2023). Nanoplastics causes extensive congenital malformations during embryonic development by passively targeting neural crest cells. Environment International, 107865.

Wang, R., DuBuc, T. Q., Steele, R. E., & Collins, E. M. (2022). Traffic light Hydra allows for simultaneous in vivo imaging of all three cell lineages. Developmental Biology. doi: 10.1016/j.ydbio.2022.05.006

Wang, W., Yao, L., Cheng, C. Y., Zhang, T., Atsumi, H., Wang, L., … & Zhou, K. (2017). Harnessing the hygroscopic and biofluorescent behaviors of genetically tractable microbial cells to design biohybrid wearables. Science Advances, 3(5), e1601984. Link

Westcott, P. M., Sacks, N. J., Schenkel, J. M., Ely, Z. A., Smith, O., Hauck, H., … & Jacks, T. (2021). Low neoantigen expression and poor T-cell priming underlie early immune escape in colorectal cancer. Nature Cancer, 1-15.

Whalan, S. (2023). The role of photobehaviour in sponge larval dispersal and settlement. PLoS one, 18(7), e0287989. doi: 10.1371/journal.pone.0287989 Link

Whitcher, C. (2020). New accounts of biofluorescence in several anuran genera (Hylidae, Microhylidae, Ranidae, Leptodactylidae) with comments on intraspecific variation. Herpetology Notes, 13, 443-447. Link

• Used the Dual Fluorescent Protein flashlight with Ultraviolet and Violet excitation wavelengths to discover and photograph fluorescence in specimens.

Whitcher, C., Beaver, L., & Lemmon, E. M. (2024). The effect of biofluorescence on predation upon Cope’s gray treefrog: A clay model experiment. Behavioural Processes, 215, 104996.

Whitcher, C., Ron, S. R., Ayala-Varela, F., Crawford, A., Herrera-Alva, V., Castillo-Urbina, E., … & Moriarty Lemmon, E. (2023). Evidence for ecological tuning of novel anuran biofluorescent signals. bioRxiv, 2023-07.

White, I. A., Gordon, J., Balkan, W., & Hare, J. M. (2015). Sympathetic reinnervation is required for mammalian cardiac regeneration. Circulation Research, DOI: 10.1161/CIRCRESAHA.115.307465

Wijesekera, T. P., Wu, Z., Stephens, N. P., Godula, R., Lew, L. K., & Atkinson, N. S. (2022). A non-nuclear NF-κB modulates alcohol sensitivity but not immunity. Journal of Neuroscience. doi: 10.1523/JNEUROSCI.1963-21.2022

Wilcox, A. (2021). A Description and Examination of Fluorescence in Nine North American Firefly Species (Coleoptera: Lampyridae). Psyche: A Journal of Entomology, 2021. doi: 10.1155/2021/8856155

Wilcox, A., & Lewis, S. (2019). Fluorescence in fireflies (Coleoptera: Lampyridae): using sentinel prey to investigate a possible aposematic signal. Florida Entomologist, 102(3), 614-618. Link to free download

• Used the BlueStar flashlight for observation and photography of firefly fluorescence.

Williams, S. B., Baributsa, D., & Woloshuk, C. (2014). Assessing Purdue Improved Crop Storage (PICS) bags to mitigate fungal growth and aflatoxin contamination. Journal of Stored Products Research, 59, 190-196.

Wojdyla, K., A. Rogowska-Wrzesinska, K. Wrzesinski, and P. Roepstorff, 2011. Mass spectrometry based approach for identification and characterisation of fluorescent proteins from marine organisms. Journal of Proteomics, 75: 44-55.

Wolfowicz, I., Baumgarten, S., Voss, P. A., Hambleton, E. A., Voolstra, C. R., Hatta, M., & Guse, A. (2016). Aiptasia sp. larvae as a model to reveal mechanisms of symbiont selection in cnidarians. Scientific Reports, 6, 32366.

Woller, D. A., Foquet, B., Kilpatrick, S. K., Selking, R., Mazel, C., & Song, H. (2020). UNLOCKING THE DARK: Harnessing Blue-Light Fluorescence to Illuminate Hidden Hexapods. American Entomologist, 66(1), 38-47. Open access

• Used the Sola NIGHTSEA Flashlight to test fluorescence searching for grasshoppers in the field and to survey collections.

Wu, H., Canton, M., Mahmoud, L. M., Weber, K. R., Michalczyk, G. Z., Dutt, M., & Zale, J. M. (2022). Identification and Characterization of Two Putative Citrus Phosphomannose Isomerase (CsPMI) Genes as Selectable Markers for Mature Citrus Transformation. Horticulturae, 8(3), 204. doi: 10.3390/horticulturae8030204

Wu, H., Acanda, Y., Canton, M., & Zale, J. (2019). Efficient Biolistic Transformation of Immature Citrus Rootstocks Using Phosphomannose-isomerase Selection. Plants, 8(10), 390. Link to free download

• Used the Stereo Microscope Fluorescence Adapter SFA-RB (Royal Blue) on a Nikon SMZ 745T microscope to screen citrus (Carrizo citrange and Swingle citrumelo) shoots for successful biolistic (gene gun) GFP transformation.

Wu, G., Rossidivito, G., Hu, T., Berlyand, Y., & Poethig, R. S. (2015). Traffic Lines: New Tools for Genetic Analysis in Arabidopsis thaliana. Genetics. doi:10.1534/genetics.114.173435. Early Online publication 23 February. Open access

Wu, Y., Xia, R., Dai, C., Yan, S., Xie, T., Liu, B., … & Huang, Q. (2019). Dexamethasone inhibits the proliferation of tumor cells. Cancer Management and Research, 11, 1141.

• Used the Model DFP-1 Dual Fluorescent Protein Flashlight to select GFP-positive mice at age 6 – 8 weeks.

Xia, Y., Tang, N., Hu, Y., Li, D., Li, S., Bu, X., … & Cao, C. (2019). A method for mechanized hybrid rice seed production using female sterile rice. Rice, 12(1), 39.

Xie, W., Marty, D., Xu, J., Khatri, N., Willie, K., Moraes, W. B., & Stewart, L. R. (2020). Simultaneous Gene Expression and Multi-Gene Silencing in Zea mays Using Maize Dwarf Mosaic Virus. BMC plant biology, 21(1), 1-17. doi: 10.1186/s12870-021-02971-1

• Used the Stereo Microscope Fluorescence Adapter SFA-RB-GO (Royal Blue with green bandpass filter) to visualize GFP expression in leaves.

Xu, X., Chini, M., Bitzenhofer, S. H., & Hanganu-Opatz, I. L. (2019). Transient knock-down of prefrontal DISC1 in immune-challenged mice causes abnormal long-range coupling and cognitive dysfunction throughout development. Journal of Neuroscience, 2170-18. doi:10.1523/JNEUROSCI.2170-18.2018

Yan, S., Yin, H., Li, N., Chen, Y., Ji, C., Jiang, Q., … & Zhang, J. (2022). Combination of a nanocarrier delivery system with genetic manipulation further improves pesticide efficiency: A case study with chlorfenapyr. Environmental Science: Nano. doi: 10.1039/D2EN00126H

Yan, Y., Zhu, J., Qi, X., Cheng, B., Liu, C., & Xie, C. (2021). Establishment of an efficient seed‐fluorescence reporter‐assisted CRISPR/Cas9 gene‐editing in maize. Journal of Integrative Plant Biology. doi: 10.1111/jipb.13086

Yang, E., Metzloff, M., Langmüller, A. M., Xu, X., Clark, A. G., Messer, P. W., & Champer, J. (2022). A homing suppression gene drive with multiplexed gRNAs maintains high drive conversion efficiency and avoids functional resistance alleles. G3, 12(6), jkac081.

Yang, H., Shi, X., Chen, C., Hou, J., Ji, T., Cheng, J., & Birchler, J. A. (2021). Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize. The Plant Cell, 33(4), 901-916.

Yang, M., Lewis, F., Foley, G., & Crawley, J. N. (2015). In tribute to Bob Blanchard: Divergent behavioral phenotypes of 16p11.2 deletion mice reared in same-genotype versus mixed-genotype cages. Physiology & Behavior. doi:10.1016/j.physbeh.2015.04.023. Open access

Yang, M., Mahrt, E. J., Lewis, F., Foley, G., Portmann, T., Dolmetsch, R. E., … & Crawley, J. N. (2015). 16p11.2 Deletion Syndrome Mice Display Sensory and Ultrasonic Vocalization Deficits During Social Interactions. Autism Research. doi:10.1002/aur.1465

Yang, M., Lewis, F. C., Sarvi, M. S., Foley, G. M., & Crawley, J. N. (2015). 16p11.2 Deletion mice display cognitive deficits in touchscreen learning and novelty recognition tasks. Learning & Memory, 22(12), 622-632. Open access

Yasvoina, M. V., B. Genç, J. H. Jara, P. L. Sheets, K. A. Quinlan, A. Milosevic, G. M. G. Shepherd, C. J. Heckman, and P. H. Özdinler, 2013. eGFP expression under UCHL1 promoter genetically labels corticospinal motor neurons and a subpopulation of degeneration-resistant spinal motor neurons in an ALS mouse model. Journal of Neuroscience, 33(18): 7890-7904.

Yau, W. M., & Tycko, R. (2018). Depletion of amyloid‐β peptides from solution by sequestration within fibril‐seeded hydrogels. Protein Science.

Yen, A., Chen, X., Skinner, D. D., Leti, F., Crosby, M., Hoisington-Lopez, J., … & Dougherty, J. D. (2024). MYT1L deficiency impairs excitatory neuron trajectory during cortical development. bioRxiv, 2024-03.

• Used the Xite-GR (green excitation) flashlight to verify transcranial injections of tdTomato-labeled AAV in mice.

Yoon, Y., Wang, D., Tai, P. W., Riley, J., Gao, G., & Rivera-Pérez, J. A. (2018). Streamlined ex vivo and in vivo genome editing in mouse embryos using recombinant adeno-associated viruses. Nature Communications, 9(1), 412.

• Used the Model DFP-1 Dual Fluorescent Protein Flashlight to screen pups at postnatal day 1 or 2 (P1 or P2) for the presence of EGFP or tdTomato fluorescence. Used the DFP-1 and a camera phone to take the whole-animal fluorescence images in Figure 1.

Yu, W., & Birchler, J. A. (2016). A green fluorescent protein-engineered haploid inducer line facilitates haploid mutant screens and doubled haploid breeding in maize. Molecular Breeding, 36(1), 1-12.

Yuan, P., & Grutzendler, J. (2016). Attenuation of β-Amyloid Deposition and Neurotoxicity by Chemogenetic Modulation of Neural Activity. The Journal of Neuroscience, 36(2), 632-641.

Zahid, K., Zhao, J. H., Smith, N. A., Schumann, U., Fang, Y. Y., Dennis, E. S., … & Wang, M. B. (2015). Nicotiana Small RNA Sequences Support a Host Genome Origin of Cucumber Mosaic Virus Satellite RNA. PLoS Genetics, 11(1), e1004906. Open access

Zaidi, M. R., T. J. Hornyak, G. Merlino, 2011. A genetically engineered mouse model with inducible GFP expression in melanocytes. Pigment Cell & Melanoma Research, 24: 393–394.

Zhang, D., Wu, S., An, X., Xie, K., Zhou, Y., Xu, L., … & Li, J. (2017). Construction of a multi‐control sterility system for a maize male‐sterile line and hybrid seed production based on the ZmMs7 gene encoding a PHD‐finger transcription factor. Plant Biotechnology Journal. doi:10.1111/pbi.12786

Zhang, S., Grifno, G., Passaro, R., Regan, K., Zheng, S., Hadzipasic, M., … & Nia, H. T. (2023). Intravital measurements of solid stresses in tumours reveal length-scale and microenvironmentally dependent force transmission. Nature Biomedical Engineering, 1-20.

Zhang, S., Passaro, R., Regan, K., Hadzipasic, M., Grifno, G., Zheng, S., … & Nia, H. (2022). In vivo multiscale measurements of solid stresses in tumors reveal scale-dependent stress transmission. Research Square Preprint

• Used the SFA Stereo Microscope Fluorescence Adapter with Royal Blue (RB) excitation to visualize fluorescence under the skin to determine the presence of a tumor in a mouse model.

Zhen, Y., Cullen, C. L., Ricci, R., Summers, B. S., Rehman, S., Ahmed, Z. M., … & Young, K. M. (2022). Protocadherin 15 suppresses oligodendrocyte progenitor cell proliferation and promotes motility through distinct signalling pathways. Communications Biology, 5(1), 1-21. doi: 10.1038/s42003-022-03470-1

Zheng, L., Yang, J., Chen, Y., Ding, L., Wei, J., & Wang, H. (2021). An improved and efficient method of Agrobacterium syringe infiltration for transient transformation and its application in the elucidation of gene function in poplar. BMC Plant Biology, 21(1), 1-19.

• Used the Dual Fluorescent Protein Flashlight (DFP-1) to detect GFP expression in plant tissues.

Zhifang, L., Chong, F., Huili, J., Ningning, S., Xiaofeng, S., Qinli, Z., … & Xiaogan, Y. (2015). Expression analysis of green fluorescent protein in tissues and organs in α-1, 3 galactosyltransferase knockout pigs. Yi chuan= Hereditas, 37(12), 1211-1217.

Zhou, Y., Bennett, T. M., Ruzycki, P. A., & Shiels, A. (2021). Mutation of the EPHA2 Tyrosine-Kinase Domain Dysregulates Cell Pattern Formation and Cytoskeletal Gene Expression in the Lens. Cells, 10(10), 2606.

Zhou, Q., Guo, Y., Zheng, B., Shao, B., Jiang, M., Wang, G., … & Huang, X. (2015). Establishment of a proteome profile and identification of molecular markers for mouse spermatogonial stem cells. Journal of Cellular and Molecular Medicine, 19(3): 521-534.  doi: 10.1111/jcmm.12407. LINK

Zhou, L., Alphey, N., Walker, A. S., Travers, L. M., Hasan, F., Morrison, N. I., … & Raymond, B. (2018). Combining the high‐dose/refuge strategy and self‐limiting transgenic insects in resistance management—A test in experimental mesocosms. Evolutionary Applications, 11(5), 727-738. doi: 10.1111/eva.12573

• Used the Stereo Microscope Fluorescence Adapter SFA-GR (Green) to screen Diamondback moth pupae based on DsRed2 expression.

Zhou, Y., & Shiels, A. (2018). Epha2 and Efna5 participate in lens cell pattern-formation. Differentiation, 102, 1-9. doi:10.1016/j.diff.2018.05.002.

Zhu, T., Wu, S., Zhang, D., Li, Z., Xie, K., An, X., … & Li, J. (2019). Genome-wide analysis of maize GPAT gene family and cytological characterization and breeding application of ZmMs33/ZmGPAT6 gene. Theoretical and Applied Genetics, 1-18.

Zobrist, J. D., Martin-Ortigosa, S., Lee, K., Azanu, M. K., Ji, Q., & Wang, K. (2021). Transformation of Teosinte (Zea mays ssp. parviglumis) via Biolistic Bombardment of Seedling-Derived Callus Tissues. Frontiers in plant science, 12. doi: 10.3389/fpls.2021.773419

Zvuloni, A., O. Mokady, M. Al-Zibdah, G. Bernardi, S. D. Gaines, and A. Abelson, 2008. Local scale genetic structure in coral populations: A signature of selection. Marine Pollution Bulletin, 56:430-438.

Zweifler, A., Akkaynak, D., Mass, T., & Treibitz, T. (2017). In situ Analysis of Coral Recruits Using Fluorescence Imaging. Frontiers in Marine Science, 4, 273.